Variant report
| Variant | nsv973761 |
|---|---|
| Chromosome Location | chr9:141139884-141146907 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOXA1 | chr9:141146161-141146646 | HepG2 | liver: | n/a | n/a |
| 2 | FOXA1 | chr9:141139606-141140027 | HepG2 | liver: | n/a | n/a |
| 3 | GATA2 | chr9:141142756-141143027 | K562 | blood: | n/a | n/a |
| 4 | JUND | chr9:141146415-141146603 | HepG2 | liver: | n/a | n/a |
| 5 | PAX5 | chr9:141143745-141143908 | GM12878 | blood: | n/a | n/a |
| 6 | RXRA | chr9:141146428-141146616 | HepG2 | liver: | n/a | n/a |
| 7 | SP1 | chr9:141146240-141146637 | HepG2 | liver: | n/a | n/a |
| 8 | SPI1 | chr9:141145890-141146089 | GM12878 | blood: | n/a | n/a |
| 9 | SPI1 | chr9:141145834-141146087 | K562 | blood: | n/a | n/a |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CACNA1B-1 | chr9:141141988-141142607 | XLOC_007621 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU6-785P | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs376986880 | chr9:141142456-141142457 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs62581310 | chr9:141142518-141142519 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs113104996 | chr9:141142565-141142566 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs541687576 | chr9:141146445-141146446 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 5 | rs377704546 | chr9:141146493-141146494 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 6 | rs371029224 | chr9:141146524-141146525 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Variant related diseases (count:19)
| Disease | PMID | Source |
|---|---|---|
| Leukemia | 17361228 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Cardiac fibroma | 18329553 | CNVD |
| Lung cancer | 19147751 | CNVD |
| Cervical cancer | 17311676 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
| Chordoma | 18071362 | CNVD |
| Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
| Sudden cardiac death | 19188705 | CNVD |
| Myoepithelioma | 18604193 | CNVD |
| Tuberous sclerosis | 19566914 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| Acute lymphoblastic leukemia | 19100363 | CNVD |
| Mantle cell lymphoma | 19029149 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
