Variant report

Variant	nsv975250
Chromosome Location	chr11:48982727-48983335
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC084851.1-2	chr11:48983254-48983362	NONHSAT021303

Extended variants
information (count: 13 )
Associated
traits (count: 47 )

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs56152132	chr11:48983257-48983258	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs182873086	chr11:48983260-48983261	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs187598404	chr11:48983272-48983273	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs117263299	chr11:48983275-48983276	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs558483738	chr11:48983282-48983283	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs552634848	chr11:48983283-48983284	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs192412435	chr11:48983292-48983293	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs544898941	chr11:48983295-48983296	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs565046293	chr11:48983298-48983299	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs575460588	chr11:48983301-48983302	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs575290525	chr11:48983303-48983304	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs544488686	chr11:48983305-48983306	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs370245402	chr11:48983313-48983314	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:47)

Disease	PMID	Source
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	18632612	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22581003	CNVD
Breast cancer	21990379	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	17426248	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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