Variant report
Variant | nsv981824 |
---|---|
Chromosome Location | chr7:145893826-145897100 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs150768021 | chr7:145893851-145893852 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs71530726 | chr7:145893855-145893856 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
3 | rs207468734 | chr7:145893857-145893858 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs576865136 | chr7:145893861-145893862 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs185676718 | chr7:145893862-145893863 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs6974662 | chr7:145893918-145893919 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs540733850 | chr7:145893927-145893928 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs150008322 | chr7:145893958-145893959 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs115337827 | chr7:145893987-145893988 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs116826635 | chr7:145893993-145893994 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs190500632 | chr7:145894007-145894008 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs572005504 | chr7:145894012-145894013 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs77640240 | chr7:145894030-145894031 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs114561672 | chr7:145894035-145894036 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs577050486 | chr7:145894057-145894058 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs544424262 | chr7:145894080-145894081 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs562707151 | chr7:145894107-145894108 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs530249160 | chr7:145894175-145894176 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs73162118 | chr7:145894179-145894180 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs181776380 | chr7:145894233-145894234 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs146562250 | chr7:145894260-145894261 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs185736351 | chr7:145894261-145894262 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs141301579 | chr7:145894288-145894289 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs7794731 | chr7:145894302-145894303 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
25 | rs143550748 | chr7:145894308-145894309 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs552285560 | chr7:145894316-145894317 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs111626274 | chr7:145894350-145894351 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs550012389 | chr7:145894360-145894361 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs189018155 | chr7:145894379-145894380 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs146793679 | chr7:145894392-145894393 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs547460915 | chr7:145894396-145894397 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs528535774 | chr7:145894400-145894401 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs17169974 | chr7:145894473-145894474 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs149001068 | chr7:145894499-145894500 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs569392862 | chr7:145894528-145894529 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs577135899 | chr7:145894535-145894536 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs181036826 | chr7:145894579-145894580 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs556338638 | chr7:145894613-145894614 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs7795190 | chr7:145894615-145894616 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
40 | rs541997526 | chr7:145894617-145894618 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs554219431 | chr7:145894619-145894620 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs376154238 | chr7:145894623-145894624 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs572423099 | chr7:145894625-145894626 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs536428665 | chr7:145894704-145894705 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs143836778 | chr7:145894730-145894731 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs185507473 | chr7:145894735-145894736 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs148139563 | chr7:145894754-145894755 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs190993415 | chr7:145894787-145894788 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs561906280 | chr7:145894806-145894807 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs34229833 | chr7:145894822-145894823 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Seminomas | 18059402 | CNVD |
Testicular cancer | 18059402 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Malaria | 21533027 | CNVD |
Melanoma | 18172304 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
head and neck squamous cell carcinoma | 19289630 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Wilms tumour | 21544195 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Astrocytoma | 17387387 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Breast cancer | 21264507 | CNVD |
Shwachman-Diamond syndrome | 22934832 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Cutaneous malignant melanoma | 17690212 | CNVD |
Leukemia | 17361228 | CNVD |
Breast cancer | 16461572 | CNVD |
Peripheral t-cell lymphoma | 19118030 | CNVD |
Malignant melanoma | 17690212 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
abortions and stillbirths | 19751515 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Prostate cancer | 16573809 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
abnormal development | 18461090 | CNVD |
T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
Papillary thyroid carcinoma | 21436994 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
Hodgkin''s lymphoma | 18179710 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Breast cancer | 16272173 | CNVD |
Myxofibrosarcoma | 16751306 | CNVD |
Stuttering | 21108403 | CNVD |
Breast cancer | 17603634 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 17133270 | CNVD |
Schizophrenia | 17646849 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Heart disease | 21282601 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Gastric adenocarcinoma | 19115996 | CNVD |
Pancreatitis | 21956041 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Gastric cancer | 16891809 | CNVD |
Lung cancer | 17086460 | CNVD |
Autism | 19546859 | CNVD |
Schizophrenia | 19546859 | CNVD |
Tourette syndrome | 19546859 | CNVD |
Cancer | 20164920 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Autism | 20808228 | CNVD |
Schizophrenia | 20838587 | CNVD |
Schizophrenia | 20718829 | CNVD |
Neuropsychiatric disorder | 21827697 | CNVD |
Melanoma | 20877625 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 21509527 | CNVD |
Cancer | 20164919 | CNVD |
Autism | 20964600 | CNVD |
Epilepsy | 17646849 | CNVD |
Mental retardation | 19896112 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:145891600-145924800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
2 | chr7:145896600-145912200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |