Variant report

Variant	rs10000226
Chromosome Location	chr4:87738967-87738968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 194 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs10000891	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10001010	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10001986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10002511	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10003989	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10009309	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10009603	0.88[EUR][1000 genomes]
rs10009758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10009789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10012566	0.80[AFR][1000 genomes]
rs10013048	0.88[EUR][1000 genomes]
rs10013114	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10013467	0.86[EUR][1000 genomes]
rs10013878	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013988	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10015000	0.88[EUR][1000 genomes]
rs10016082	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10016120	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10016124	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10016456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020590	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10021168	0.95[EUR][1000 genomes]
rs10023163	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10024496	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10024631	0.95[EUR][1000 genomes]
rs10024860	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10025930	0.82[AMR][1000 genomes]
rs10026645	0.92[EUR][1000 genomes]
rs10028003	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10028357	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10028550	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10029055	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10029565	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10030981	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10032126	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10032979	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10033029	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs10033679	0.93[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10084899	0.81[EUR][1000 genomes]
rs10084902	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10084954	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10212681	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10212723	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10213021	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10213484	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10213632	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1038290	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10470883	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10470933	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10516780	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10516783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10516784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11097118	0.93[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11097119	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11097120	0.93[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11930396	0.82[ASW][hapmap];0.87[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs11947598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12171330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12171331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12171388	0.96[EUR][1000 genomes]
rs12171414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12171415	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12171445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12171458	0.84[AFR][1000 genomes]
rs12171459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12171474	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12498606	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12498653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12498681	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12499471	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12499477	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12499575	0.91[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12499984	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12499991	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12500797	0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12502376	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12504551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507034	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12507163	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12508339	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12508746	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12509049	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12509560	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12511153	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12511318	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12512858	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12710827	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13108514	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13108571	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13108581	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13108735	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13109164	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13109738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13110760	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13111757	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13112139	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13112150	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13115122	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13115681	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13117481	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13118632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13120724	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13131069	0.82[AMR][1000 genomes]
rs13136201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13136651	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13148078	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13148807	0.96[EUR][1000 genomes]
rs13149431	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150561	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13152382	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1420620	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs1420622	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420623	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012119	1.00[JPT][hapmap]
rs17454432	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17454655	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17694358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28409669	0.96[EUR][1000 genomes]
rs28411302	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28416315	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28417582	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28421178	0.87[EUR][1000 genomes]
rs28441099	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28448567	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28455719	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483600	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28491390	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28502328	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28535818	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28545322	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28548225	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28558568	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28570548	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28572183	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28572787	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28578632	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28587332	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28610135	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28619493	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28623441	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28631999	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634740	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28645624	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28663463	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28674577	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28682899	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28696860	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28710769	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28785508	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28785868	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28833029	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28846800	0.88[EUR][1000 genomes]
rs28868582	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28877076	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34178790	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34320168	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34371873	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35254293	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35323910	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35355289	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35528563	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35915886	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35982123	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66584788	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67067959	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6817630	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71605612	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71605613	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71605614	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71605615	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71605617	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71605618	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71633353	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7664147	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7664860	0.93[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7698481	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7699564	0.93[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes]
rs9307022	0.92[EUR][1000 genomes]
rs9307023	0.92[EUR][1000 genomes]
rs9307024	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9307026	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9884784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9985645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9993492	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9993838	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9994213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9995978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9997271	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9997453	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9999866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10000226	LELP1	trans	cerebellum	SCAN
rs10000226	PTPN13	cis	cerebellum	SCAN
rs10000226	PIGY	cis	cerebellum	SCAN
rs10000226	PTPN13	cis	parietal	SCAN

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87639400-87739200	Weak transcription	A549	lung
2	chr4:87712600-87751400	Weak transcription	Aorta	Aorta
3	chr4:87712800-87739600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:87725800-87739200	Weak transcription	Hela-S3	cervix
5	chr4:87731200-87756000	Weak transcription	Pancreas	Pancrea
6	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
7	chr4:87735600-87740400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:87737000-87739000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:87737200-87739400	Weak transcription	NH-A	brain
10	chr4:87737200-87741000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:87737400-87739000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:87737400-87739400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:87737400-87739400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:87737400-87739600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:87737400-87739600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:87737400-87739800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:87737400-87739800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:87737400-87741200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:87737400-87743600	Weak transcription	Brain Anterior Caudate	brain
20	chr4:87737400-87744200	Weak transcription	Left Ventricle	heart
21	chr4:87737600-87739000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:87737600-87739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:87737600-87740200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr4:87737600-87740600	Enhancers	Fetal Lung	lung
25	chr4:87737600-87742200	Weak transcription	Fetal Kidney	kidney
26	chr4:87737600-87744600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:87737600-87746600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:87737600-87752600	Weak transcription	Esophagus	oesophagus
29	chr4:87737800-87739000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:87737800-87739800	Weak transcription	HMEC	breast
31	chr4:87737800-87739800	Enhancers	NHEK	skin
32	chr4:87737800-87741000	Enhancers	Fetal Intestine Large	intestine
33	chr4:87737800-87754800	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:87738000-87739800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:87738000-87741200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:87738000-87743000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:87738200-87739600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:87738200-87740000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:87738200-87740600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:87738200-87746800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:87738200-87752000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:87738400-87739000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:87738400-87739400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:87738400-87739800	Enhancers	NHDF-Ad	bronchial
45	chr4:87738400-87743200	Weak transcription	Adipose Nuclei	Adipose
46	chr4:87738400-87744600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:87738400-87744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:87738400-87746400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:87738600-87739600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:87738600-87741000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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