Variant report
Variant | rs10000795 |
---|---|
Chromosome Location | chr4:120322994-120322995 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10008386 | 0.86[EUR][1000 genomes] |
rs10008392 | 0.86[EUR][1000 genomes] |
rs10014719 | 0.86[EUR][1000 genomes] |
rs10016944 | 0.86[EUR][1000 genomes] |
rs10017271 | 0.81[EUR][1000 genomes] |
rs10017543 | 0.86[EUR][1000 genomes] |
rs10023569 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10024844 | 0.84[EUR][1000 genomes] |
rs10025054 | 0.84[EUR][1000 genomes] |
rs10028669 | 0.81[EUR][1000 genomes] |
rs10031718 | 0.81[EUR][1000 genomes] |
rs10518331 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10857068 | 0.83[EUR][1000 genomes] |
rs11098513 | 0.86[EUR][1000 genomes] |
rs11098514 | 0.84[EUR][1000 genomes] |
rs1112817 | 0.80[EUR][1000 genomes] |
rs12504149 | 0.86[EUR][1000 genomes] |
rs12506148 | 0.86[EUR][1000 genomes] |
rs12508173 | 0.86[EUR][1000 genomes] |
rs12509234 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs12512118 | 0.84[EUR][1000 genomes] |
rs12512154 | 0.84[EUR][1000 genomes] |
rs13133522 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs13151285 | 0.86[EUR][1000 genomes] |
rs2389802 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs28549914 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs28572238 | 0.86[EUR][1000 genomes] |
rs28714195 | 0.86[EUR][1000 genomes] |
rs34913743 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs35091806 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs35165976 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs3890049 | 0.85[EUR][1000 genomes] |
rs4079144 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4296662 | 0.80[ASN][1000 genomes] |
rs4309825 | 0.84[EUR][1000 genomes] |
rs4345162 | 0.82[EUR][1000 genomes] |
rs4463052 | 0.81[ASN][1000 genomes] |
rs4560394 | 0.80[ASN][1000 genomes] |
rs4604043 | 0.86[EUR][1000 genomes] |
rs59394118 | 0.81[EUR][1000 genomes] |
rs6820376 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6832410 | 0.81[EUR][1000 genomes] |
rs6838617 | 0.81[EUR][1000 genomes] |
rs6845714 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6846442 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6846620 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs71610279 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs71610280 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7437420 | 0.84[EUR][1000 genomes] |
rs7695996 | 0.86[EUR][1000 genomes] |
rs7696465 | 0.86[EUR][1000 genomes] |
rs7696649 | 0.86[EUR][1000 genomes] |
rs7696857 | 0.84[EUR][1000 genomes] |
rs7696875 | 0.84[EUR][1000 genomes] |
rs9995045 | 0.83[EUR][1000 genomes] |
rs9995234 | 0.86[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
2 | nsv1012868 | chr4:120014630-120464880 | Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
3 | nsv537232 | chr4:120014630-120464880 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
4 | nsv428769 | chr4:120205572-120363323 | Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
5 | nsv879841 | chr4:120244085-120388406 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | nsv879842 | chr4:120244085-120424087 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
7 | nsv427694 | chr4:120250511-120501728 | Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
8 | esv2538163 | chr4:120252854-120388678 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
9 | nsv967791 | chr4:120316592-120323446 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs10000795 | FLJ14186///LOC284701///LOC441124///LOC728624 | Cis_1M | lymphoblastoid | RTeQTL |
rs10000795 | RP11-33B1.1 | cis | Heart Left Ventricle | GTEx |
rs10000795 | RP11-384K6.6 | cis | Whole Blood | GTEx |
rs10000795 | RP11-33B1.1 | cis | Nerve Tibial | GTEx |
rs10000795 | RP11-33B1.4 | cis | Whole Blood | GTEx |
rs10000795 | RP11-33B1.1 | cis | Whole Blood | GTEx |
rs10000795 | RP11-33B1.1 | cis | Esophagus Mucosa | GTEx |
rs10000795 | LOC645513 | Cis_1M | lymphoblastoid | RTeQTL |
rs10000795 | RP11-33B1.1 | cis | lung | GTEx |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:120317600-120325600 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
2 | chr4:120318000-120333400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |