Variant report

Variant	rs10000984
Chromosome Location	chr4:175644564-175644565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175644373..175645949-chr4:175653690..175656140,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10004534	0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10007273	0.92[CHB][hapmap];1.00[YRI][hapmap]
rs10009999	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap]
rs10011025	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10013656	0.83[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10020688	0.84[ASN][1000 genomes]
rs10213085	0.83[ASN][1000 genomes]
rs10471163	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10520290	0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11725853	0.91[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs11737591	0.82[ASN][1000 genomes]
rs12499257	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504255	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12509326	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12509729	0.84[JPT][hapmap]
rs13142152	0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1352056	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1485939	0.92[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs1485940	0.83[YRI][hapmap]
rs1485941	0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs1564939	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1586338	0.92[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs1586339	0.82[ASN][1000 genomes]
rs17060785	0.89[ASN][1000 genomes]
rs28408827	0.82[ASN][1000 genomes]
rs28432255	0.81[ASN][1000 genomes]
rs28538678	0.87[ASN][1000 genomes]
rs28688380	0.89[ASN][1000 genomes]
rs2877828	0.89[ASN][1000 genomes]
rs35706713	0.84[ASN][1000 genomes]
rs4447833	0.89[ASN][1000 genomes]
rs4594702	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6853281	0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7656851	0.88[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7658547	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685854	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9312559	1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];0.86[YRI][hapmap]
rs9884969	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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