Variant report

Variant	rs10001129
Chromosome Location	chr4:47441534-47441535
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10013941	0.95[AFR][1000 genomes]
rs10025348	0.84[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap]
rs28437730	0.90[AFR][1000 genomes]
rs28437900	0.92[AFR][1000 genomes]
rs28484715	1.00[AMR][1000 genomes]
rs28564999	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28626278	0.90[AFR][1000 genomes]
rs28664264	0.90[AFR][1000 genomes]
rs4235144	1.00[MEX][hapmap]
rs7656397	0.84[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47436200-47444800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:47436800-47465000	Weak transcription	Gastric	stomach
3	chr4:47437000-47441800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:47438600-47464200	Weak transcription	Small Intestine	intestine
5	chr4:47441000-47442400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:47441000-47456000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:47441400-47444600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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