Variant report

Variant	rs10001771
Chromosome Location	chr4:96548022-96548023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12499437	0.89[EUR][1000 genomes]
rs12641406	0.90[EUR][1000 genomes]
rs1436569	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1436570	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1436590	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1436591	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1865852	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28522563	0.83[ASN][1000 genomes]
rs2865708	0.82[ASN][1000 genomes]
rs34735998	0.82[ASN][1000 genomes]
rs35163600	0.82[ASN][1000 genomes]
rs35988502	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4699269	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57688009	0.82[ASN][1000 genomes]
rs66961649	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6815247	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6820560	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6839720	0.89[EUR][1000 genomes]
rs750915	0.81[ASN][1000 genomes]
rs7674945	0.83[ASN][1000 genomes]
rs7682279	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7697432	0.83[ASN][1000 genomes]
rs7698156	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs977737	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs977738	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9884214	0.83[ASN][1000 genomes]
rs9991132	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10001771	SMARCAD1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96544000-96549000	Weak transcription	Aorta	Aorta
2	chr4:96547200-96549000	Weak transcription	Fetal Stomach	stomach

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