Variant report

Variant	rs10002341
Chromosome Location	chr4:143579940-143579941
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10519662	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1373037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425526	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17016533	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016550	1.00[AMR][1000 genomes]
rs17016753	1.00[AMR][1000 genomes]
rs1838083	1.00[AMR][1000 genomes]
rs28497887	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59800331	1.00[AMR][1000 genomes]
rs60395025	0.81[AFR][1000 genomes]
rs73850509	0.88[AFR][1000 genomes]
rs73850568	1.00[AMR][1000 genomes]
rs7667002	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143574400-143583800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:143575400-143583800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:143575600-143582400	ZNF genes & repeats	Dnd41	blood
4	chr4:143577200-143580000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr4:143578600-143600600	Weak transcription	Fetal Heart	heart
6	chr4:143579200-143582400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr4:143579600-143580000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
8	chr4:143579800-143580200	ZNF genes & repeats	Left Ventricle	heart
9	chr4:143579800-143585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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