Variant report

Variant	rs10003529
Chromosome Location	chr4:144183733-144183734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144153122..144155090-chr4:144182581..144184458,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10000911	0.82[ASN][1000 genomes]
rs10002888	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10009906	0.82[ASN][1000 genomes]
rs10015751	0.82[ASN][1000 genomes]
rs10029419	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10033104	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10155434	0.82[ASN][1000 genomes]
rs10434185	0.82[ASN][1000 genomes]
rs11100781	0.82[ASN][1000 genomes]
rs11732484	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11947142	0.81[ASN][1000 genomes]
rs12649219	0.82[ASN][1000 genomes]
rs13113047	0.82[ASN][1000 genomes]
rs13114280	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13118943	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13138084	0.82[ASN][1000 genomes]
rs13151561	0.82[ASN][1000 genomes]
rs1440412	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1440414	0.82[ASN][1000 genomes]
rs1440418	0.82[ASN][1000 genomes]
rs1440419	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2119269	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2323076	0.82[ASN][1000 genomes]
rs2323077	0.82[ASN][1000 genomes]
rs300921	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs300924	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs300925	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs300927	0.92[EUR][1000 genomes]
rs300929	0.92[EUR][1000 genomes]
rs300934	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs300938	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs300940	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs300941	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3910622	0.82[ASN][1000 genomes]
rs4285045	0.82[ASN][1000 genomes]
rs4413361	0.82[ASN][1000 genomes]
rs4690780	0.82[ASN][1000 genomes]
rs4690783	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs534750	0.82[ASN][1000 genomes]
rs587254	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs632359	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6826771	0.82[ASN][1000 genomes]
rs6839312	0.82[ASN][1000 genomes]
rs6845478	0.82[ASN][1000 genomes]
rs6845907	0.82[ASN][1000 genomes]
rs6848475	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6856785	0.82[ASN][1000 genomes]
rs7435424	0.82[ASN][1000 genomes]
rs7436840	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs763918	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7673827	0.82[ASN][1000 genomes]
rs9992676	0.82[ASN][1000 genomes]
rs9996072	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv4531	chr4:144174573-144192930	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3338857	chr4:144181087-144184122	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144172800-144184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:144173600-144184000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:144180200-144183800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:144182400-144184000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:144182800-144184000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:144182800-144184800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:144183400-144184400	Enhancers	H9 Cell Line	embryonic stem cell

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