Variant report

Variant	rs10005851
Chromosome Location	chr4:81971970-81971971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10007784	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10019046	0.92[JPT][hapmap]
rs10516738	0.92[JPT][hapmap]
rs11099459	0.92[JPT][hapmap]
rs12642476	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13122304	0.92[JPT][hapmap]
rs13133972	0.84[JPT][hapmap]
rs13138361	0.84[JPT][hapmap]
rs13141362	0.92[JPT][hapmap]
rs1495634	0.92[JPT][hapmap]
rs1495637	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17005034	0.92[JPT][hapmap]
rs2903746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733549	0.82[JPT][hapmap]
rs4389567	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs7697151	0.91[JPT][hapmap]
rs924048	0.92[JPT][hapmap]
rs985328	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:81961400-81973200	Weak transcription	Primary B cells from cord blood	blood
4	chr4:81961600-81973400	Weak transcription	Fetal Intestine Small	intestine
5	chr4:81967600-81973400	Weak transcription	Fetal Intestine Large	intestine
6	chr4:81968400-81973400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:81969400-81973800	Enhancers	Rectal Smooth Muscle	rectum
8	chr4:81971200-81972200	Enhancers	Fetal Kidney	kidney
9	chr4:81971400-81973400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:81971400-81974200	Enhancers	Colon Smooth Muscle	Colon
11	chr4:81971600-81972800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:81971600-81973400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:81971600-81983000	Weak transcription	Ovary	ovary
14	chr4:81971800-81973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:81971800-81973400	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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