Variant report

Variant	rs10006150
Chromosome Location	chr4:125007788-125007789
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10001102	1.00[EUR][1000 genomes]
rs10003066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020359	1.00[EUR][1000 genomes]
rs10026543	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10027705	1.00[EUR][1000 genomes]
rs10031916	1.00[EUR][1000 genomes]
rs10035038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007841	1.00[EUR][1000 genomes]
rs17007847	1.00[EUR][1000 genomes]
rs17007871	1.00[EUR][1000 genomes]
rs17007878	1.00[EUR][1000 genomes]
rs17007899	1.00[EUR][1000 genomes]
rs17007928	1.00[EUR][1000 genomes]
rs28378981	1.00[EUR][1000 genomes]
rs28489957	1.00[EUR][1000 genomes]
rs28624926	0.87[AFR][1000 genomes]
rs28698550	0.87[AFR][1000 genomes]
rs28729089	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28738782	1.00[EUR][1000 genomes]
rs28787435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28800262	0.87[AFR][1000 genomes]
rs4392519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55699942	1.00[EUR][1000 genomes]
rs56186706	1.00[EUR][1000 genomes]
rs57640377	1.00[EUR][1000 genomes]
rs58290947	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58598675	0.85[AFR][1000 genomes]
rs58704645	0.80[AFR][1000 genomes]
rs61314672	1.00[EUR][1000 genomes]
rs61455398	1.00[EUR][1000 genomes]
rs62320027	0.87[AFR][1000 genomes]
rs62320039	0.85[AFR][1000 genomes]
rs6534433	1.00[EUR][1000 genomes]
rs6816830	0.87[AFR][1000 genomes]
rs6834825	1.00[EUR][1000 genomes]
rs6844499	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845303	1.00[EUR][1000 genomes]
rs73845304	1.00[EUR][1000 genomes]
rs73845306	1.00[EUR][1000 genomes]
rs73845307	1.00[EUR][1000 genomes]
rs73845308	1.00[EUR][1000 genomes]
rs73845309	1.00[EUR][1000 genomes]
rs73845312	1.00[EUR][1000 genomes]
rs73845313	1.00[EUR][1000 genomes]
rs73846841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846846	1.00[EUR][1000 genomes]
rs73846850	1.00[EUR][1000 genomes]
rs73846855	1.00[EUR][1000 genomes]
rs73846857	1.00[EUR][1000 genomes]
rs73846858	1.00[EUR][1000 genomes]
rs9992719	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1014750	chr4:124966525-125111807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1000839	chr4:124966525-125115590	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125006400-125008400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:125007000-125007800	Weak transcription	Fetal Lung	lung
3	chr4:125007200-125008200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:125007200-125008200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:125007200-125008400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:125007200-125011000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links