Variant report

Variant	rs10006418
Chromosome Location	chr4:143612741-143612742
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143603202..143605409-chr4:143612309..143615155,2	MCF-7	breast:
2	chr4:143610637..143613671-chr4:143616411..143618882,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10000770	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10015404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10020322	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10020865	0.89[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11732693	1.00[CHB][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11733464	0.80[CEU][hapmap]
rs13103597	0.94[AMR][1000 genomes]
rs13114437	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13353799	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1348362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1348363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415364	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28485272	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28673920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733118	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28758601	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34082059	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34234953	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34393544	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34626802	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34699252	0.87[EUR][1000 genomes]
rs35255414	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35366693	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36101393	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36142547	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60361448	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62330251	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62331862	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6834451	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6849164	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6856817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7655597	1.00[CHB][hapmap]
rs7691439	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143585600-143613000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143607800-143613600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr4:143609200-143615800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:143609800-143613800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr4:143610200-143617000	Weak transcription	Thymus	Thymus
6	chr4:143611000-143617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:143611000-143617400	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:143611600-143617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:143611800-143613000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:143611800-143613000	Enhancers	Left Ventricle	heart
11	chr4:143611800-143617000	Enhancers	Dnd41	blood
12	chr4:143612000-143613000	Enhancers	Psoas Muscle	Psoas
13	chr4:143612400-143613200	Enhancers	Fetal Heart	heart
14	chr4:143612400-143617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:143612600-143613000	Weak transcription	Fetal Thymus	thymus

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