Variant report

Variant	rs10006511
Chromosome Location	chr4:96558214-96558215
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96557966..96558741-chr4:97273098..97274003,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10013217	0.82[ASN][1000 genomes]
rs10015906	0.82[ASN][1000 genomes]
rs10016846	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10016927	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10022798	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10025352	0.82[ASN][1000 genomes]
rs12506817	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12510917	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12644144	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12646265	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13106700	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13129220	0.82[ASN][1000 genomes]
rs13131332	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1436590	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1436591	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1436594	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1865852	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28432792	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28480454	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28522563	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2865708	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34735998	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34888770	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35128711	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35163600	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35988502	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4699269	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs5011717	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57688009	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66961649	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs750915	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7659302	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7674945	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7680957	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7681580	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7682279	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7697432	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7697645	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs977737	0.80[EUR][1000 genomes]
rs977738	0.81[EUR][1000 genomes]
rs9884214	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9990668	0.82[ASN][1000 genomes]
rs9990964	0.82[ASN][1000 genomes]
rs9992379	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9994273	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007133	chr4:96556072-96614235	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96550400-96560000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:96557800-96558600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:96557800-96558600	Enhancers	Brain Substantia Nigra	brain
4	chr4:96558000-96558400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:96558000-96558600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:96558000-96558600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:96558000-96558600	Enhancers	Fetal Stomach	stomach
8	chr4:96558200-96558400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:96558200-96558600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:96558200-96558600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:96558200-96558600	Enhancers	Brain Anterior Caudate	brain
12	chr4:96558200-96558600	Enhancers	Brain Cingulate Gyrus	brain
13	chr4:96558200-96561600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links