Variant report
| Variant | rs10007273 |
|---|---|
| Chromosome Location | chr4:175646482-175646483 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10000984 | 0.92[CHB][hapmap];1.00[YRI][hapmap] |
| rs10009999 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs10011025 | 0.92[CHB][hapmap] |
| rs10013656 | 0.81[CHB][hapmap] |
| rs10471163 | 0.80[JPT][hapmap] |
| rs10520290 | 0.82[ASN][1000 genomes] |
| rs11725853 | 0.81[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12499257 | 0.93[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12504255 | 1.00[CHB][hapmap];0.80[JPT][hapmap] |
| rs1352056 | 0.81[CHB][hapmap] |
| rs1485939 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap] |
| rs1485940 | 1.00[CEU][hapmap];0.85[YRI][hapmap] |
| rs1485941 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap] |
| rs1564939 | 0.92[CHB][hapmap] |
| rs1586338 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap] |
| rs17060785 | 0.82[ASN][1000 genomes] |
| rs28688380 | 0.81[ASN][1000 genomes] |
| rs2877828 | 0.82[ASN][1000 genomes] |
| rs4447833 | 0.82[ASN][1000 genomes] |
| rs4594702 | 0.81[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs7656851 | 0.91[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7658547 | 0.91[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7685854 | 0.81[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs9312559 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869116 | chr4:175231090-175801761 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018390 | chr4:175475505-175969742 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
