Variant report

Variant	rs10009093
Chromosome Location	chr4:143629934-143629935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143537607..143539576-chr4:143628828..143631506,2	MCF-7	breast:
2	chr4:143629918..143632766-chr4:143633001..143634713,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11723032	0.82[EUR][1000 genomes]
rs11732693	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs11732995	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
2	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143627200-143630600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr4:143628200-143630600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143628200-143631600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143628200-143631600	ZNF genes & repeats	Dnd41	blood
7	chr4:143628600-143630400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
8	chr4:143628800-143630200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr4:143628800-143631000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:143628800-143631400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr4:143628800-143632000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr4:143629000-143630000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:143629200-143630000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:143629200-143630200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:143629600-143630000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:143629600-143630200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:143629600-143630200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr4:143629600-143630800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:143629600-143630800	ZNF genes & repeats	Aorta	Aorta
20	chr4:143629600-143634000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr4:143629800-143630200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
22	chr4:143629800-143634400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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