Variant report

Variant	rs10011414
Chromosome Location	chr4:147923940-147923941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10029336	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10029415	1.00[AFR][1000 genomes]
rs10032981	1.00[AFR][1000 genomes]
rs13353682	1.00[AFR][1000 genomes]
rs13434880	1.00[AFR][1000 genomes]
rs28429124	1.00[AFR][1000 genomes]
rs28485213	1.00[AFR][1000 genomes]
rs28489480	1.00[AFR][1000 genomes]
rs28580106	1.00[AFR][1000 genomes]
rs28657904	1.00[AFR][1000 genomes]
rs28688131	1.00[AFR][1000 genomes]
rs28690223	1.00[AFR][1000 genomes]
rs28698911	1.00[AFR][1000 genomes]
rs73853282	1.00[AFR][1000 genomes]
rs73853292	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147913400-147925200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:147923000-147926600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:147923400-147926000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:147923400-147926000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:147923600-147924000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:147923600-147924200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:147923600-147925000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr4:147923600-147925800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:147923600-147925800	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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