Variant report

Variant	rs10013367
Chromosome Location	chr4:143470757-143470758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:143470148..143471805-chr4:143527645..143530325,2	MCF-7	breast:
2	chr4:143422833..143425725-chr4:143470115..143471682,2	MCF-7	breast:
3	chr4:143451539..143454827-chr4:143468974..143471578,3	MCF-7	breast:
4	chr4:143390493..143399629-chr4:143464669..143473703,24	MCF-7	breast:
5	chr4:143470482..143472862-chr4:143765653..143767436,2	MCF-7	breast:
6	chr4:143455514..143457916-chr4:143469730..143472176,3	MCF-7	breast:
7	chr4:143436234..143437895-chr4:143469778..143471517,2	MCF-7	breast:
8	chr4:143469458..143471257-chr4:143473239..143475404,2	MCF-7	breast:
9	chr4:143469197..143474225-chr4:143534708..143538333,6	MCF-7	breast:
10	chr4:143469254..143471063-chr4:143535925..143538743,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11100750	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160379	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12505079	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12645394	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13144094	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1425519	0.80[ASN][1000 genomes]
rs1476122	0.86[ASN][1000 genomes]
rs16998558	0.87[ASN][1000 genomes]
rs16998560	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17016344	0.87[ASN][1000 genomes]
rs17016354	0.84[ASN][1000 genomes]
rs17016379	0.84[ASN][1000 genomes]
rs1963849	0.84[ASN][1000 genomes]
rs1974940	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042643	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34007357	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34223306	0.82[ASN][1000 genomes]
rs4246729	0.87[ASN][1000 genomes]
rs4524461	0.80[ASN][1000 genomes]
rs4975312	0.83[ASN][1000 genomes]
rs4975313	0.87[ASN][1000 genomes]
rs4975314	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57201046	0.84[ASN][1000 genomes]
rs57260347	0.84[ASN][1000 genomes]
rs58899027	0.81[ASN][1000 genomes]
rs60257926	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6537110	0.84[ASN][1000 genomes]
rs67078907	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67311549	0.84[ASN][1000 genomes]
rs6814775	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6826090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655599	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664281	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7671198	0.87[ASN][1000 genomes]
rs7694593	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143461400-143471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:143463000-143472200	Weak transcription	Aorta	Aorta
3	chr4:143465600-143470800	Weak transcription	Stomach Mucosa	stomach
4	chr4:143465600-143472800	Weak transcription	Fetal Lung	lung
5	chr4:143465800-143470800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:143466000-143470800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:143466000-143471200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:143466600-143471000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:143468400-143473400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:143468600-143472600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:143468600-143473200	Enhancers	Fetal Intestine Small	intestine
12	chr4:143468800-143480000	Weak transcription	Left Ventricle	heart
13	chr4:143469000-143470800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr4:143469000-143473400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:143469200-143472600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:143469400-143472400	Weak transcription	Small Intestine	intestine
17	chr4:143469400-143477200	Weak transcription	Psoas Muscle	Psoas
18	chr4:143469600-143471200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:143469600-143472400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:143469800-143470800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:143469800-143471000	Weak transcription	NHDF-Ad	bronchial
22	chr4:143470000-143473200	Enhancers	NH-A	brain
23	chr4:143470200-143471400	Enhancers	A549	lung
24	chr4:143470200-143471600	Flanking Active TSS	NHEK	skin
25	chr4:143470200-143472600	Enhancers	Fetal Intestine Large	intestine
26	chr4:143470200-143472800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:143470200-143473600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:143470200-143474800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr4:143470200-143477400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr4:143470400-143470800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:143470400-143470800	Enhancers	Pancreas	Pancrea
32	chr4:143470400-143470800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr4:143470400-143471000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:143470400-143471000	Flanking Active TSS	HMEC	breast
35	chr4:143470400-143471200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr4:143470400-143471400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:143470400-143471400	Enhancers	Esophagus	oesophagus
38	chr4:143470400-143471600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr4:143470400-143471600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr4:143470400-143472200	Enhancers	Fetal Heart	heart
41	chr4:143470400-143472400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:143470400-143472400	Enhancers	Hela-S3	cervix
43	chr4:143470400-143472400	Enhancers	HUVEC	blood vessel
44	chr4:143470400-143472600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:143470400-143473200	Enhancers	HSMM	muscle
46	chr4:143470400-143478000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr4:143470600-143471400	Enhancers	Primary T cells from cord blood	blood
48	chr4:143470600-143471400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:143470600-143471400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:143470600-143471600	Enhancers	HUES48 Cell Line	embryonic stem cell

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