Variant report

Variant	rs10014087
Chromosome Location	chr4:81940661-81940662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11099457	0.84[ASN][1000 genomes]
rs1495644	0.82[ASN][1000 genomes]
rs17005022	0.90[ASN][1000 genomes]
rs28416900	0.84[ASN][1000 genomes]
rs28420618	0.84[ASN][1000 genomes]
rs2868128	0.90[ASN][1000 genomes]
rs4693151	0.84[ASN][1000 genomes]
rs4693781	0.84[ASN][1000 genomes]
rs6823242	0.84[ASN][1000 genomes]
rs7676223	0.84[ASN][1000 genomes]
rs963322	0.82[ASN][1000 genomes]
rs963856	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3412549	chr4:81834479-81951850	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10014087	LST1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81937600-81941400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:81939800-81942000	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr4:81939800-81943000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr4:81940000-81941400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:81940000-81944200	Enhancers	Fetal Intestine Large	intestine
6	chr4:81940400-81940800	Weak transcription	Fetal Intestine Small	intestine
7	chr4:81940600-81941400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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