Variant report

Variant	rs10015279
Chromosome Location	chr4:144041025-144041026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144040234..144042737-chr4:144104934..144107567,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170185	Chromatin interaction
ENSG00000250326	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10000911	0.81[ASN][1000 genomes]
rs10002888	0.81[ASN][1000 genomes]
rs10004364	0.81[ASN][1000 genomes]
rs10004598	0.82[ASN][1000 genomes]
rs10009906	0.81[ASN][1000 genomes]
rs10015751	0.81[ASN][1000 genomes]
rs10033104	0.81[ASN][1000 genomes]
rs10034769	0.82[ASN][1000 genomes]
rs10155434	0.81[ASN][1000 genomes]
rs10434185	0.81[ASN][1000 genomes]
rs10857405	0.82[ASN][1000 genomes]
rs11100770	0.82[ASN][1000 genomes]
rs11100771	0.82[ASN][1000 genomes]
rs11100781	0.81[ASN][1000 genomes]
rs11722352	0.81[AFR][1000 genomes]
rs11732484	0.81[ASN][1000 genomes]
rs12640698	0.83[ASN][1000 genomes]
rs12649219	0.81[ASN][1000 genomes]
rs13102238	0.81[ASN][1000 genomes]
rs13113047	0.81[ASN][1000 genomes]
rs13116507	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13137565	0.83[ASN][1000 genomes]
rs13138084	0.81[ASN][1000 genomes]
rs13151561	0.81[ASN][1000 genomes]
rs1440414	0.81[ASN][1000 genomes]
rs1440418	0.81[ASN][1000 genomes]
rs1440419	0.81[ASN][1000 genomes]
rs2323076	0.81[ASN][1000 genomes]
rs2323077	0.81[ASN][1000 genomes]
rs300934	0.81[ASN][1000 genomes]
rs300938	0.81[ASN][1000 genomes]
rs300940	0.81[ASN][1000 genomes]
rs300941	0.81[ASN][1000 genomes]
rs3910622	0.81[ASN][1000 genomes]
rs4285045	0.81[ASN][1000 genomes]
rs4318600	0.82[ASN][1000 genomes]
rs4323054	0.82[ASN][1000 genomes]
rs4323055	0.82[ASN][1000 genomes]
rs4333135	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4336176	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4413361	0.81[ASN][1000 genomes]
rs4502634	0.82[ASN][1000 genomes]
rs4561881	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4566607	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4579067	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4626148	0.82[ASN][1000 genomes]
rs4690771	0.82[ASN][1000 genomes]
rs4690780	0.81[ASN][1000 genomes]
rs534750	0.81[ASN][1000 genomes]
rs587254	0.81[ASN][1000 genomes]
rs632359	0.81[ASN][1000 genomes]
rs6537150	0.82[ASN][1000 genomes]
rs6537151	0.82[ASN][1000 genomes]
rs6812522	0.83[ASN][1000 genomes]
rs6826771	0.81[ASN][1000 genomes]
rs6829621	0.82[ASN][1000 genomes]
rs6839312	0.81[ASN][1000 genomes]
rs6845478	0.81[ASN][1000 genomes]
rs6845907	0.81[ASN][1000 genomes]
rs6848475	0.81[ASN][1000 genomes]
rs6854861	0.82[ASN][1000 genomes]
rs6856785	0.81[ASN][1000 genomes]
rs72719159	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72719160	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72719163	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72719173	0.87[ASN][1000 genomes]
rs72719179	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72719180	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7435424	0.81[ASN][1000 genomes]
rs7673827	0.81[ASN][1000 genomes]
rs7675127	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7676152	0.81[AFR][1000 genomes]
rs7680365	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7685075	0.82[ASN][1000 genomes]
rs7685461	0.82[ASN][1000 genomes]
rs7692813	0.83[ASN][1000 genomes]
rs7693583	0.82[ASN][1000 genomes]
rs7693817	0.82[ASN][1000 genomes]
rs9631769	0.82[ASN][1000 genomes]
rs9790396	0.82[ASN][1000 genomes]
rs9790822	0.82[ASN][1000 genomes]
rs9992676	0.81[ASN][1000 genomes]
rs9996072	0.81[ASN][1000 genomes]
rs9998017	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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