Variant report

Variant	rs10015582
Chromosome Location	chr4:47932851-47932852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:47915649..47917988-chr4:47930284..47933272,2	MCF-7	breast:
2	chr4:47931421..47933962-chr4:48023489..48026018,2	MCF-7	breast:
3	chr4:47913034..47916657-chr4:47929562..47933478,3	K562	blood:

Variant related genes	Relation type
ENSG00000170448	Chromatin interaction
ENSG00000163293	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10049713	1.00[YRI][hapmap]
rs16860680	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1866688	1.00[YRI][hapmap]
rs28642966	0.92[YRI][hapmap]
rs3950558	0.85[YRI][hapmap]
rs9992371	1.00[AMR][1000 genomes]
rs9998800	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1013947	chr4:47915527-48052824	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537082	chr4:47915527-48052824	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47929200-47933000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:47929200-47933000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:47929200-47933000	Weak transcription	Brain Germinal Matrix	brain
4	chr4:47929200-47933000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:47929200-47933000	Weak transcription	Stomach Mucosa	stomach
6	chr4:47929200-47933000	Weak transcription	HepG2	liver
7	chr4:47929200-47936200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:47932600-47934000	Enhancers	Fetal Intestine Small	intestine
9	chr4:47932800-47933000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:47932800-47933000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:47932800-47933200	Enhancers	Pancreas	Pancrea
12	chr4:47932800-47933400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:47932800-47933600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:47932800-47933600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:47932800-47933600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:47932800-47933600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:47932800-47933600	Enhancers	Fetal Intestine Large	intestine
18	chr4:47932800-47933600	Enhancers	Fetal Lung	lung
19	chr4:47932800-47933600	Enhancers	HMEC	breast
20	chr4:47932800-47933600	Enhancers	HUVEC	blood vessel
21	chr4:47932800-47933600	Enhancers	NHEK	skin
22	chr4:47932800-47933600	Enhancers	NHLF	lung
23	chr4:47932800-47933800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:47932800-47933800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:47932800-47933800	Enhancers	HSMM	muscle
26	chr4:47932800-47933800	Enhancers	NH-A	brain
27	chr4:47932800-47934000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:47932800-47934000	Enhancers	Liver	Liver
29	chr4:47932800-47934000	Enhancers	NHDF-Ad	bronchial
30	chr4:47932800-47934000	Enhancers	Osteobl	bone

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