Variant report

Variant	rs10016074
Chromosome Location	chr6:158601607-158601608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10019950	0.89[ASN][1000 genomes]
rs1035191	0.94[ASN][1000 genomes]
rs10516778	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12331502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12503659	0.97[ASN][1000 genomes]
rs12510802	0.94[ASN][1000 genomes]
rs13113689	0.93[ASN][1000 genomes]
rs1420621	0.93[ASN][1000 genomes]
rs17420607	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17420966	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17454154	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17454662	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2006842	0.94[ASN][1000 genomes]
rs2054592	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054593	0.89[ASN][1000 genomes]
rs2230600	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28769973	0.85[AFR][1000 genomes]
rs3775236	0.97[ASN][1000 genomes]
rs3775238	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3775239	0.93[ASN][1000 genomes]
rs4263359	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4693780	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57954319	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs67867077	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72665791	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7660864	0.82[AFR][1000 genomes]
rs969734	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9762349	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886797	chr6:158523142-158764191	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv830849	chr6:158539223-158700882	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1025025	chr6:158542594-158743888	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv869308	chr6:158593667-159166618	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:158590000-158613400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:158590000-158616600	Weak transcription	Small Intestine	intestine
3	chr6:158590000-158621800	Weak transcription	GM12878-XiMat	blood
4	chr6:158590200-158604200	Weak transcription	K562	blood
5	chr6:158590200-158604400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:158590200-158604400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:158590200-158604400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:158590200-158604400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:158590200-158604400	Weak transcription	Spleen	Spleen
10	chr6:158590200-158604600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:158590200-158606200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:158590200-158608000	Weak transcription	Placenta	Placenta
13	chr6:158590200-158610200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:158590200-158611400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:158590200-158613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:158590200-158613000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:158590200-158613000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:158590200-158616000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:158590200-158616000	Weak transcription	Thymus	Thymus
20	chr6:158590200-158618000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:158590200-158618000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:158590400-158607400	Weak transcription	Primary B cells from cord blood	blood
23	chr6:158591000-158620600	Weak transcription	Esophagus	oesophagus
24	chr6:158591200-158603400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:158592200-158604400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:158592200-158609000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:158592200-158622000	Weak transcription	Fetal Brain Male	brain
28	chr6:158592400-158604000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr6:158592600-158608000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:158592600-158609200	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:158592600-158613000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:158592600-158616400	Weak transcription	Brain Angular Gyrus	brain
33	chr6:158592800-158604400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:158592800-158604400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:158592800-158604800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:158592800-158606200	Weak transcription	Fetal Stomach	stomach
37	chr6:158592800-158607400	Weak transcription	Dnd41	blood
38	chr6:158592800-158608200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:158592800-158609200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:158592800-158614400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:158593000-158604600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:158593000-158611400	Weak transcription	Fetal Kidney	kidney
43	chr6:158593000-158612800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:158593000-158613000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:158593200-158610000	Weak transcription	Primary T cells from cord blood	blood
46	chr6:158595200-158604400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:158595400-158602400	Weak transcription	HepG2	liver
48	chr6:158595800-158604400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:158595800-158604400	Weak transcription	Liver	Liver
50	chr6:158595800-158607800	Weak transcription	Right Ventricle	heart

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