Variant report

Variant	rs10016770
Chromosome Location	chr4:142061195-142061196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10008705	0.82[CHB][hapmap]
rs10029478	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12509440	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13435125	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1395668	0.81[ASN][1000 genomes]
rs1395669	0.81[ASN][1000 genomes]
rs1873370	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2321862	0.81[ASN][1000 genomes]
rs28417061	0.89[ASN][1000 genomes]
rs28457672	0.89[ASN][1000 genomes]
rs28628800	0.89[ASN][1000 genomes]
rs4267811	0.88[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4386678	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4613644	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4629541	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4956513	0.81[ASN][1000 genomes]
rs4956514	0.88[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4956515	0.89[ASN][1000 genomes]
rs4956516	0.89[ASN][1000 genomes]
rs4956517	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6537030	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6813119	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6817313	0.81[ASN][1000 genomes]
rs6826231	0.81[ASN][1000 genomes]
rs6831578	0.81[ASN][1000 genomes]
rs6853785	1.00[ASN][1000 genomes]
rs756170	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7658695	0.81[ASN][1000 genomes]
rs7669929	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9790672	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9790673	0.88[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526770	chr4:142048547-142061946	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142056000-142062000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:142056400-142061800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:142056600-142061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:142056600-142061800	Weak transcription	Fetal Stomach	stomach
5	chr4:142056600-142063600	Weak transcription	Left Ventricle	heart
6	chr4:142056800-142061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:142056800-142062000	Weak transcription	Fetal Heart	heart
8	chr4:142057200-142061400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:142060000-142063000	Enhancers	Fetal Muscle Leg	muscle

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