Variant report

Variant	rs10016938
Chromosome Location	chr4:120606183-120606184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10003106	0.82[AFR][1000 genomes]
rs11722660	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726524	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11730012	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731926	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732719	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005450	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005667	1.00[ASN][1000 genomes]
rs17295253	1.00[ASN][1000 genomes]
rs17296412	1.00[ASN][1000 genomes]
rs28654836	0.98[AFR][1000 genomes]
rs35428685	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857096	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55685100	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55717715	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788903	0.91[ASN][1000 genomes]
rs55929181	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56291824	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56336246	0.91[ASN][1000 genomes]
rs56337310	1.00[ASN][1000 genomes]
rs57160305	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57678859	0.81[EUR][1000 genomes]
rs58342688	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59063054	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60849110	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61595361	0.82[ASN][1000 genomes]
rs61707138	1.00[ASN][1000 genomes]
rs722808	0.91[ASN][1000 genomes]
rs72906506	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906508	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906511	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906573	0.91[ASN][1000 genomes]
rs73842698	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73842702	0.89[AFR][1000 genomes]
rs73842716	1.00[ASN][1000 genomes]
rs9968281	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1802546	chr4:120558608-120675026	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1010638	chr4:120586178-120671835	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1009771	chr4:120590902-120665812	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3467357	chr4:120600110-120606689	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3467358	chr4:120600110-120606689	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv822711	chr4:120600253-120606566	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1826347	chr4:120604860-120609268	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv441910	chr4:120604860-120609268	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120601400-120606600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:120602800-120606400	Enhancers	Fetal Lung	lung
3	chr4:120604400-120606200	Enhancers	Liver	Liver
4	chr4:120604400-120606400	Enhancers	NHLF	lung
5	chr4:120605000-120606600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:120605200-120609200	Weak transcription	Fetal Stomach	stomach
7	chr4:120605400-120608000	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:120605600-120606200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:120605600-120606400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:120605600-120606400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:120605600-120606400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:120605600-120606600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:120606000-120606400	Enhancers	HUES64 Cell Line	embryonic stem cell

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