Variant report

Variant	rs10018015
Chromosome Location	chr4:79475442-79475443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10019438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28454015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6533779	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7660496	1.00[AMR][1000 genomes]
rs7682725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79472400-79475600	Active TSS	Right Atrium	heart
2	chr4:79473400-79475600	Enhancers	NHLF	lung
3	chr4:79473400-79481400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:79473400-79481400	Weak transcription	HSMM	muscle
5	chr4:79473400-79481600	Weak transcription	Gastric	stomach
6	chr4:79473400-79481600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:79473400-79485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:79473600-79478200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:79473600-79479800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:79473600-79481400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:79473600-79481600	Weak transcription	Pancreas	Pancrea
12	chr4:79473600-79481800	Weak transcription	Small Intestine	intestine
13	chr4:79473600-79487200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:79473800-79475600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
15	chr4:79473800-79481400	Weak transcription	Aorta	Aorta
16	chr4:79474000-79475600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr4:79474000-79482200	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:79474200-79475800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:79474400-79475600	Enhancers	Fetal Lung	lung
20	chr4:79474400-79475600	Enhancers	Stomach Mucosa	stomach
21	chr4:79474400-79475600	Enhancers	HSMMtube	muscle
22	chr4:79474400-79475800	Transcr. at gene 5' and 3'	NHEK	skin
23	chr4:79474400-79481400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:79474400-79481400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:79474400-79481800	Weak transcription	Esophagus	oesophagus
26	chr4:79474400-79486600	Weak transcription	Psoas Muscle	Psoas
27	chr4:79474400-79527200	Weak transcription	Spleen	Spleen
28	chr4:79474600-79475600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:79474600-79475600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr4:79474600-79480800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr4:79474600-79481400	Weak transcription	Fetal Stomach	stomach
32	chr4:79474600-79481800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:79474600-79482400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:79474600-79488200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr4:79474800-79475600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr4:79474800-79475600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr4:79474800-79481600	Weak transcription	K562	blood
38	chr4:79475000-79475600	Transcr. at gene 5' and 3'	HMEC	breast
39	chr4:79475000-79480800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr4:79475000-79481400	Weak transcription	Fetal Heart	heart
41	chr4:79475000-79481600	Weak transcription	Placenta	Placenta
42	chr4:79475200-79475600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:79475200-79476000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:79475200-79476000	Weak transcription	Fetal Intestine Large	intestine
45	chr4:79475200-79476000	Weak transcription	Fetal Intestine Small	intestine
46	chr4:79475200-79478200	Weak transcription	Left Ventricle	heart
47	chr4:79475200-79479800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:79475200-79481600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr4:79475200-79481600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr4:79475200-79481600	Weak transcription	Lung	lung

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