Variant report

Variant	rs10019046
Chromosome Location	chr4:81963960-81963961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10005851	0.92[JPT][hapmap]
rs10007784	0.92[JPT][hapmap]
rs10516738	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642476	0.92[JPT][hapmap]
rs13122304	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133972	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138361	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13141362	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495637	0.91[JPT][hapmap]
rs17005034	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903746	0.92[JPT][hapmap]
rs34042179	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34094604	0.87[EUR][1000 genomes]
rs3733549	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389567	0.92[JPT][hapmap]
rs4403042	0.84[MKK][hapmap];0.82[YRI][hapmap]
rs6831641	1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71596047	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659948	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7661611	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7697151	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924048	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985328	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81955400-81967200	Weak transcription	Fetal Stomach	stomach
3	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:81960800-81967000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:81961000-81967000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:81961200-81971000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:81961400-81973200	Weak transcription	Primary B cells from cord blood	blood
8	chr4:81961600-81967000	Weak transcription	Ovary	ovary
9	chr4:81961600-81967000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:81961600-81973400	Weak transcription	Fetal Intestine Small	intestine
11	chr4:81961800-81967000	Weak transcription	Fetal Intestine Large	intestine
12	chr4:81961800-81969400	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:81963600-81964000	Enhancers	Adipose Nuclei	Adipose
14	chr4:81963800-81964200	Enhancers	Liver	Liver
15	chr4:81963800-81964200	Bivalent Enhancer	NHDF-Ad	bronchial
16	chr4:81963800-81964400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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