Variant report

Variant	rs10019249
Chromosome Location	chr4:144102193-144102194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144096235..144099412-chr4:144099530..144102386,3	K562	blood:

Extended variants
information (count: 187 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs10000911	0.90[ASN][1000 genomes]
rs10001113	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10002867	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10002888	0.90[ASN][1000 genomes]
rs10004364	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10004598	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10009906	0.90[ASN][1000 genomes]
rs10010367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10011709	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012434	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015190	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015751	0.90[ASN][1000 genomes]
rs10026015	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10028434	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10029373	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10031363	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10033104	0.90[ASN][1000 genomes]
rs10034769	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10155434	0.90[ASN][1000 genomes]
rs1039762	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039763	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10434185	0.90[ASN][1000 genomes]
rs10519678	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10857405	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100770	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100771	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100772	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11100778	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11100779	0.89[ASN][1000 genomes]
rs11100780	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100781	0.90[ASN][1000 genomes]
rs11100782	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11100783	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11724872	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11725565	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11727441	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11728962	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11732484	0.90[ASN][1000 genomes]
rs11737209	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11933603	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11940580	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11943957	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11947142	0.89[ASN][1000 genomes]
rs12499485	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12501994	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12505142	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506120	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12640698	0.93[ASN][1000 genomes]
rs12647238	0.81[ASN][1000 genomes]
rs12649219	0.90[ASN][1000 genomes]
rs13102238	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13106497	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13113047	0.90[ASN][1000 genomes]
rs13114280	0.83[ASN][1000 genomes]
rs13116414	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13116507	0.82[ASN][1000 genomes]
rs13118943	0.88[ASN][1000 genomes]
rs13119330	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13128884	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13137565	0.93[ASN][1000 genomes]
rs13138084	0.90[ASN][1000 genomes]
rs13139457	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13140643	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13151561	0.90[ASN][1000 genomes]
rs1440410	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1440411	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440412	0.89[ASN][1000 genomes]
rs1440414	0.90[ASN][1000 genomes]
rs1440416	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440418	0.90[ASN][1000 genomes]
rs1440419	0.90[ASN][1000 genomes]
rs1470130	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1605581	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2010767	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2119269	0.83[ASN][1000 genomes]
rs2165301	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2165302	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2323076	0.90[ASN][1000 genomes]
rs2323077	0.90[ASN][1000 genomes]
rs28470858	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28592151	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28649839	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300921	0.89[ASN][1000 genomes]
rs300924	0.89[ASN][1000 genomes]
rs300925	0.89[ASN][1000 genomes]
rs300927	0.84[ASN][1000 genomes]
rs300929	0.84[ASN][1000 genomes]
rs300934	0.90[ASN][1000 genomes]
rs300938	0.90[ASN][1000 genomes]
rs300939	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300940	0.90[ASN][1000 genomes]
rs300941	0.90[ASN][1000 genomes]
rs34168479	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34342939	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34664017	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910622	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4131029	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4132266	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234886	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4234887	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4285045	0.90[ASN][1000 genomes]
rs4290853	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4312712	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4318600	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4323054	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4323055	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4333135	0.82[ASN][1000 genomes]
rs4336176	0.88[ASN][1000 genomes]
rs4407450	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4413361	0.90[ASN][1000 genomes]
rs4502634	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4511955	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4513514	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4561881	0.82[ASN][1000 genomes]
rs4563450	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4566607	0.88[ASN][1000 genomes]
rs4574353	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4579067	0.82[ASN][1000 genomes]
rs4582112	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4626148	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4637346	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690715	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690771	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690773	0.84[EUR][1000 genomes]
rs4690774	0.85[ASN][1000 genomes]
rs4690775	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690777	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690778	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4690779	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690780	0.90[ASN][1000 genomes]
rs4690781	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690783	0.80[ASN][1000 genomes]
rs534750	0.90[ASN][1000 genomes]
rs57168887	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs587254	0.90[ASN][1000 genomes]
rs62330278	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62330280	0.83[ASN][1000 genomes]
rs632359	0.90[ASN][1000 genomes]
rs6537150	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537151	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6812522	0.93[ASN][1000 genomes]
rs6816223	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818149	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6820538	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822299	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6826771	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6827229	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6828369	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6829621	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6832943	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6833582	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6837133	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6839312	0.90[ASN][1000 genomes]
rs6845478	0.90[ASN][1000 genomes]
rs6845907	0.90[ASN][1000 genomes]
rs6848475	0.90[ASN][1000 genomes]
rs6854861	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856785	0.90[ASN][1000 genomes]
rs72719159	0.88[ASN][1000 genomes]
rs72719160	0.88[ASN][1000 genomes]
rs72719163	0.88[ASN][1000 genomes]
rs72719173	0.86[ASN][1000 genomes]
rs72719179	0.88[ASN][1000 genomes]
rs72719180	0.88[ASN][1000 genomes]
rs7435424	0.90[ASN][1000 genomes]
rs7436840	0.88[ASN][1000 genomes]
rs763918	0.83[ASN][1000 genomes]
rs7656276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670439	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673827	0.90[ASN][1000 genomes]
rs7675127	0.82[ASN][1000 genomes]
rs7680365	0.93[ASN][1000 genomes]
rs7685075	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685461	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7687417	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692813	0.93[ASN][1000 genomes]
rs7693583	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7693817	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9308169	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9631769	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685571	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9790396	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9790822	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs985619	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9992676	0.90[ASN][1000 genomes]
rs9996072	0.90[ASN][1000 genomes]
rs9998017	0.93[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144096600-144104800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:144096800-144104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:144097600-144102200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr4:144097600-144103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:144097800-144104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:144097800-144104800	Weak transcription	Psoas Muscle	Psoas
7	chr4:144098000-144104400	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:144098200-144103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:144098400-144103600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:144098400-144104800	Weak transcription	HSMMtube	muscle
11	chr4:144098600-144104600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:144099200-144105400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:144099200-144105400	Weak transcription	Left Ventricle	heart
14	chr4:144099200-144105400	Weak transcription	Small Intestine	intestine
15	chr4:144099800-144104800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:144100200-144105000	Weak transcription	Stomach Mucosa	stomach
17	chr4:144100200-144105000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr4:144100400-144103400	Weak transcription	Primary T cells from cord blood	blood
19	chr4:144100600-144104600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:144100600-144104800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:144100600-144104800	Weak transcription	Fetal Lung	lung
22	chr4:144100600-144105000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:144100600-144105200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:144100800-144104000	Weak transcription	Primary B cells from cord blood	blood
25	chr4:144101000-144104600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:144102000-144102200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:144102000-144103200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:144102000-144103800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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