The 2.0 version of rSNPBase

Variant report

Variant rs10020099
Chromosome Location chr4:143097084-143097085
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:143018800-143109600 Weak transcription Fetal Muscle Trunk muscle
2 chr4:143049800-143114400 Weak transcription Right Ventricle heart
3 chr4:143052400-143111600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
4 chr4:143057800-143114400 Weak transcription Aorta Aorta
5 chr4:143058000-143181000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr4:143061800-143102200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr4:143069800-143112200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr4:143070400-143134400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr4:143071000-143117800 Weak transcription Psoas Muscle Psoas
10 chr4:143072000-143137000 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr4:143076800-143107200 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr4:143076800-143113200 Weak transcription Pancreas Pancrea
13 chr4:143078200-143103400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr4:143081000-143128200 Weak transcription NHDF-Ad bronchial
15 chr4:143082000-143130000 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr4:143082400-143134800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr4:143082800-143115800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr4:143083200-143100000 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr4:143084600-143099600 Weak transcription Fetal Heart heart
20 chr4:143088600-143108200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr4:143089000-143108400 Strong transcription Primary T helper cells PMA-I stimulated --
22 chr4:143089400-143118000 Strong transcription Primary T helper cells fromperipheralblood blood
23 chr4:143089800-143100000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr4:143090000-143117400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr4:143091400-143097200 Strong transcription Primary T helper naive cells from peripheral blood blood
26 chr4:143091600-143100600 Strong transcription HSMMtube muscle
27 chr4:143091600-143106200 Strong transcription Primary T cells fromperipheralblood blood
28 chr4:143092000-143103200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr4:143092400-143116200 Weak transcription Stomach Smooth Muscle stomach
30 chr4:143092400-143131000 Weak transcription Fetal Intestine Large intestine
31 chr4:143093000-143104200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr4:143094000-143098800 Strong transcription Primary T cells from cord blood blood
33 chr4:143094200-143105400 Weak transcription Muscle Satellite Cultured Cells --
34 chr4:143094800-143114000 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr4:143095000-143097800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr4:143095000-143102000 Weak transcription Fetal Muscle Leg muscle
37 chr4:143095000-143115400 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr4:143095000-143128000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr4:143095000-143128200 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr4:143095000-143154200 Weak transcription Left Ventricle heart
41 chr4:143095200-143097800 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr4:143095200-143097800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr4:143095200-143097800 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr4:143095400-143097600 Weak transcription Primary hematopoietic stem cells blood
45 chr4:143095600-143112400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr4:143096400-143097800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr4:143096400-143097800 Weak transcription HMEC breast
48 chr4:143096400-143099200 Weak transcription NHEK skin
49 chr4:143096400-143101000 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr4:143096600-143097400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015