Variant report

Variant	rs10021790
Chromosome Location	chr4:87772240-87772241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10011798	0.85[ASN][1000 genomes]
rs10015121	0.85[ASN][1000 genomes]
rs10015477	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10021020	0.90[ASN][1000 genomes]
rs10034336	0.83[ASN][1000 genomes]
rs1010902	0.82[ASN][1000 genomes]
rs1010903	0.82[ASN][1000 genomes]
rs13115795	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13120981	0.90[ASN][1000 genomes]
rs13137483	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17012132	0.92[ASN][1000 genomes]
rs1985944	0.82[ASN][1000 genomes]
rs2121871	0.90[ASN][1000 genomes]
rs28446826	0.84[ASN][1000 genomes]
rs28641910	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28650493	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28716151	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35428486	0.88[ASN][1000 genomes]
rs55698195	0.90[ASN][1000 genomes]
rs56201068	0.86[ASN][1000 genomes]
rs6823051	0.88[ASN][1000 genomes]
rs6846822	0.85[ASN][1000 genomes]
rs72667703	0.82[ASN][1000 genomes]
rs72667705	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87769600-87776800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:87769800-87778600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:87770200-87776800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:87770400-87778600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:87771200-87776200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:87771600-87776200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:87771600-87776200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:87771600-87776800	Weak transcription	Right Atrium	heart
9	chr4:87771600-87785600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:87771800-87775800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:87771800-87776200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:87771800-87776400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:87771800-87776400	Weak transcription	NHEK	skin
14	chr4:87771800-87776800	Weak transcription	Left Ventricle	heart
15	chr4:87771800-87776800	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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