Variant report

Variant	rs10022617
Chromosome Location	chr4:8570344-8570345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10009267	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10025505	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025999	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28749327	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28757386	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28830543	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28837427	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28846242	1.00[EUR][1000 genomes]
rs28862340	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3103087	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3103088	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3115393	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3115394	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55835818	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59554781	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6447883	0.82[EUR][1000 genomes]
rs6823859	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73799386	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv878612	chr4:8534283-8618916	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1832730	chr4:8541086-9514568	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
5	esv1843578	chr4:8541086-9514568	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
6	nsv878613	chr4:8554894-8618916	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv878614	chr4:8554894-8669619	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv878615	chr4:8566758-8625245	Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv878616	chr4:8566758-8669619	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv878617	chr4:8566758-9371116	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8568000-8571000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:8568400-8570800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:8568600-8570600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:8568800-8573800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:8569000-8570400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:8569200-8570400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr4:8569200-8570800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:8569400-8577600	Enhancers	Placenta	Placenta
9	chr4:8569600-8570400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:8569600-8570400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr4:8569600-8579000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:8569800-8570600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:8569800-8570800	Enhancers	HSMMtube	muscle
14	chr4:8569800-8572600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:8570000-8573600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:8570200-8570600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:8570200-8570600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:8570200-8570600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:8570200-8570600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:8570200-8572200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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