Variant report

Variant	rs10022738
Chromosome Location	chr4:56866509-56866510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56864492..56867321-chr4:56873422..56875435,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10004239	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213231	1.00[AMR][1000 genomes]
rs12331143	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17086211	1.00[AMR][1000 genomes]
rs28368303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470583	1.00[AMR][1000 genomes]
rs28472737	1.00[AMR][1000 genomes]
rs28573719	1.00[AMR][1000 genomes]
rs28587231	1.00[AMR][1000 genomes]
rs28590097	1.00[AMR][1000 genomes]
rs28611007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28649591	1.00[AMR][1000 genomes]
rs28695752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28744399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28770194	1.00[AMR][1000 genomes]
rs73151521	1.00[AMR][1000 genomes]
rs9992612	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56815800-56875000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:56816200-56873400	Weak transcription	Pancreas	Pancrea
3	chr4:56816200-56884200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:56816200-56887800	Weak transcription	Gastric	stomach
5	chr4:56816400-56890800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:56816600-56890600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:56816600-56896400	Weak transcription	Fetal Heart	heart
8	chr4:56816800-56869800	Weak transcription	HepG2	liver
9	chr4:56817400-56885400	Weak transcription	NHDF-Ad	bronchial
10	chr4:56819000-56897400	Weak transcription	HSMMtube	muscle
11	chr4:56819200-56890600	Weak transcription	NHLF	lung
12	chr4:56820600-56892400	Weak transcription	Hela-S3	cervix
13	chr4:56822200-56873600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:56823600-56893800	Weak transcription	HMEC	breast
15	chr4:56825600-56870000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:56828200-56884200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:56829200-56881400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:56829600-56890600	Weak transcription	A549	lung
19	chr4:56833000-56877200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:56835400-56904800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:56837200-56905000	Weak transcription	Brain Substantia Nigra	brain
22	chr4:56839800-56896600	Weak transcription	Brain Angular Gyrus	brain
23	chr4:56840200-56878000	Weak transcription	NHEK	skin
24	chr4:56840200-56884600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:56840600-56866600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:56842800-56890800	Weak transcription	Osteobl	bone
27	chr4:56844200-56891000	Weak transcription	Colonic Mucosa	Colon
28	chr4:56847000-56873800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr4:56847200-56891000	Weak transcription	Right Ventricle	heart
30	chr4:56848800-56878000	Weak transcription	HSMM	muscle
31	chr4:56850400-56868400	Weak transcription	Fetal Brain Male	brain
32	chr4:56850800-56872200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:56852600-56890600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:56853200-56876600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr4:56853800-56876600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:56856200-56892600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:56856400-56889200	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr4:56857200-56870400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr4:56857400-56868600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:56857600-56897400	Strong transcription	Fetal Thymus	thymus
41	chr4:56857600-56898200	Strong transcription	Dnd41	blood
42	chr4:56857600-56898200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr4:56858000-56866600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:56858000-56866800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr4:56858200-56866600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:56858200-56889200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:56858600-56870400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr4:56858800-56875000	Strong transcription	Primary hematopoietic stem cells	blood
49	chr4:56859200-56866600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:56859600-56868200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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