Variant report

Variant	rs10024696
Chromosome Location	chr4:143647878-143647879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143646473..143648911-chr4:143650261..143652367,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10857399	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11100754	0.88[EUR][1000 genomes]
rs11100760	0.81[EUR][1000 genomes]
rs11723982	0.82[ASN][1000 genomes]
rs11724017	0.84[ASN][1000 genomes]
rs11726381	0.88[ASN][1000 genomes]
rs11933763	0.94[EUR][1000 genomes]
rs12509304	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12640389	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12644329	0.88[EUR][1000 genomes]
rs13117185	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13141925	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13435565	0.88[EUR][1000 genomes]
rs1373030	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1373031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373032	0.89[EUR][1000 genomes]
rs1373034	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1443183	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1443185	0.88[EUR][1000 genomes]
rs1443186	0.88[EUR][1000 genomes]
rs1443187	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1465962	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs167960	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17016768	0.88[ASN][1000 genomes]
rs17016777	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17016779	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17732408	0.88[ASN][1000 genomes]
rs17732791	0.85[EUR][1000 genomes]
rs179508	0.91[EUR][1000 genomes]
rs1822360	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1822361	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1822362	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1838082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867214	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs191762	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1965828	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992417	0.84[EUR][1000 genomes]
rs1992418	0.84[EUR][1000 genomes]
rs2589994	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28420913	0.88[EUR][1000 genomes]
rs3113593	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331939	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331940	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331942	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331943	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs331944	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs331945	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs331946	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331947	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331948	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs331949	0.91[EUR][1000 genomes]
rs331950	0.91[EUR][1000 genomes]
rs331951	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331952	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs331953	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331954	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331956	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331957	0.84[EUR][1000 genomes]
rs331958	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331959	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331960	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331961	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331962	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331963	0.91[EUR][1000 genomes]
rs331964	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331965	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331966	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34442253	0.89[EUR][1000 genomes]
rs4690699	0.89[EUR][1000 genomes]
rs4690700	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4690725	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4690726	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690727	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56011189	0.90[ASN][1000 genomes]
rs56332157	0.87[ASN][1000 genomes]
rs6537124	0.91[EUR][1000 genomes]
rs6537127	0.83[EUR][1000 genomes]
rs6813458	0.87[EUR][1000 genomes]
rs6816424	0.88[EUR][1000 genomes]
rs6819498	0.88[EUR][1000 genomes]
rs6831562	0.82[EUR][1000 genomes]
rs6831927	0.88[EUR][1000 genomes]
rs6844306	0.88[EUR][1000 genomes]
rs6845583	0.88[EUR][1000 genomes]
rs6852570	0.91[EUR][1000 genomes]
rs72728641	0.90[ASN][1000 genomes]
rs72728649	0.87[ASN][1000 genomes]
rs72728651	0.86[ASN][1000 genomes]
rs72728667	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7376475	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7666140	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7667183	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7688275	0.86[EUR][1000 genomes]
rs966457	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143630800-143650200	Weak transcription	Aorta	Aorta
2	chr4:143635000-143648200	Weak transcription	Thymus	Thymus
3	chr4:143637200-143653000	Weak transcription	Left Ventricle	heart
4	chr4:143641400-143648400	Weak transcription	Primary T cells from cord blood	blood
5	chr4:143641600-143652800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:143642800-143664200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:143646800-143649200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:143647400-143648200	Weak transcription	Fetal Thymus	thymus
9	chr4:143647400-143652200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:143647600-143648000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:143647800-143648200	Enhancers	Dnd41	blood

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