Variant report

Variant	rs1002617
Chromosome Location	chr2:213463580-213463581
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10179457	0.80[EUR][1000 genomes]
rs10179622	0.80[EUR][1000 genomes]
rs10204755	0.80[EUR][1000 genomes]
rs10210112	0.80[EUR][1000 genomes]
rs13384047	0.80[EUR][1000 genomes]
rs13384253	0.80[EUR][1000 genomes]
rs13401993	0.80[EUR][1000 genomes]
rs13402051	0.80[EUR][1000 genomes]
rs13402119	0.80[EUR][1000 genomes]
rs13404602	0.80[EUR][1000 genomes]
rs13404790	0.80[EUR][1000 genomes]
rs13405155	0.80[EUR][1000 genomes]
rs13418175	0.80[EUR][1000 genomes]
rs13418296	0.80[EUR][1000 genomes]
rs13418412	0.80[EUR][1000 genomes]
rs1987801	0.80[EUR][1000 genomes]
rs56159667	0.80[EUR][1000 genomes]
rs72949047	0.80[EUR][1000 genomes]
rs72949055	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213462600-213483200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links