Variant report

Variant	rs10027282
Chromosome Location	chr4:147898913-147898914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1036499	0.82[ASN][1000 genomes]
rs12650032	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13150180	0.81[ASN][1000 genomes]
rs1347655	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17022216	0.81[ASN][1000 genomes]
rs17022238	0.81[ASN][1000 genomes]
rs2118258	0.81[ASN][1000 genomes]
rs28430726	0.81[ASN][1000 genomes]
rs28628802	0.81[ASN][1000 genomes]
rs28735087	0.81[ASN][1000 genomes]
rs4467588	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826357	chr4:147876484-147900981	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3414195	chr4:147897629-147899274	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147895600-147899000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:147897800-147902600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:147897800-147902800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:147898200-147905800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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