Variant report

Variant	rs10028945
Chromosome Location	chr4:47428305-47428306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47425451..47428331-chr4:47428663..47430199,2	MCF-7	breast:
2	chr4:47427677..47430366-chr4:47433913..47436003,2	K562	blood:

Variant related genes	Relation type
ENSG00000260918	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10016916	0.85[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017560	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10470771	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11934717	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11940241	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12510975	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13106855	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13434696	0.87[CEU][hapmap];0.85[JPT][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16860198	0.87[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4130363	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4403019	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4635794	0.83[CEU][hapmap]
rs62297852	0.94[ASN][1000 genomes]
rs62297855	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62297856	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62297858	0.91[ASN][1000 genomes]
rs62300077	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62300078	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822230	0.83[CEU][hapmap]
rs73234555	0.91[ASN][1000 genomes]
rs73234578	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73234586	0.85[ASN][1000 genomes]
rs73234587	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7436716	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7659411	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7672333	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678771	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7679148	0.87[CEU][hapmap];0.85[JPT][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7693987	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain
2	chr4:47425400-47433000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:47428200-47433200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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