Variant report
| Variant | rs10029336 |
|---|---|
| Chromosome Location | chr4:147922377-147922378 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10011414 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs10029415 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10032981 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13353682 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13434880 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17022344 | 1.00[AMR][1000 genomes] |
| rs28418624 | 1.00[AMR][1000 genomes] |
| rs28419085 | 1.00[AMR][1000 genomes] |
| rs28427468 | 1.00[AMR][1000 genomes] |
| rs28429124 | 1.00[AFR][1000 genomes] |
| rs28485213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28489480 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28490972 | 1.00[AMR][1000 genomes] |
| rs28580106 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28657904 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28688131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28690223 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28698911 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853260 | 1.00[AMR][1000 genomes] |
| rs73853282 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73856341 | 1.00[AMR][1000 genomes] |
| rs73856355 | 1.00[AMR][1000 genomes] |
| rs73856360 | 1.00[AMR][1000 genomes] |
| rs73856361 | 1.00[AMR][1000 genomes] |
| rs9995564 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880240 | chr4:147905897-148032003 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:147913400-147925200 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
