Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10002888	0.81[EUR][1000 genomes]
rs10003529	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10033104	0.87[EUR][1000 genomes]
rs11732484	0.81[EUR][1000 genomes]
rs13114280	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13118943	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1440412	0.83[EUR][1000 genomes]
rs1440418	0.80[EUR][1000 genomes]
rs1440419	0.81[EUR][1000 genomes]
rs2119269	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs300921	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs300924	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs300925	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs300927	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs300929	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs300934	0.82[EUR][1000 genomes]
rs300938	0.87[EUR][1000 genomes]
rs300940	0.87[EUR][1000 genomes]
rs300941	0.87[EUR][1000 genomes]
rs4690783	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs587254	0.81[EUR][1000 genomes]
rs632359	0.81[EUR][1000 genomes]
rs6848475	0.81[EUR][1000 genomes]
rs7436840	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs763918	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv4531	chr4:144174573-144192930	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144188600-144188800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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