Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143740384..143741938-chr4:143748371..143749871,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13103261	0.87[EUR][1000 genomes]
rs13105531	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13106530	0.80[ASN][1000 genomes]
rs13132001	1.00[EUR][1000 genomes]
rs13140375	0.86[CHB][hapmap]
rs17016810	0.89[AFR][1000 genomes]
rs17016812	0.89[AFR][1000 genomes]
rs28367408	0.91[EUR][1000 genomes]
rs28410519	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28421948	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28453834	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28462985	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28504492	0.96[ASN][1000 genomes]
rs28533753	0.96[EUR][1000 genomes]
rs28665985	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28667040	1.00[EUR][1000 genomes]
rs28715653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804364	0.91[EUR][1000 genomes]
rs58691249	0.89[AFR][1000 genomes]
rs60144874	0.89[AFR][1000 genomes]
rs62331921	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62331922	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62331933	1.00[EUR][1000 genomes]
rs62331934	0.91[EUR][1000 genomes]
rs72937904	0.89[AFR][1000 genomes]
rs7661683	0.89[AFR][1000 genomes]
rs7662067	0.89[EUR][1000 genomes]
rs7683763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994268	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143732600-143749600	Weak transcription	Right Ventricle	heart
2	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143741200-143751800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:143744000-143753200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143747200-143751600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143748400-143750400	Weak transcription	Left Ventricle	heart
7	chr4:143748600-143750400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:143749000-143750000	Weak transcription	Fetal Heart	heart

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