Variant report

Variant	rs10031990
Chromosome Location	chr4:87415928-87415929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87412697..87414960-chr4:87415593..87417580,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10031237	1.00[AFR][1000 genomes]
rs13129988	1.00[AFR][1000 genomes]
rs13134099	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34238796	1.00[AFR][1000 genomes]
rs35788198	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87405000-87418400	Weak transcription	Fetal Kidney	kidney
2	chr4:87407000-87417000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:87407600-87422600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:87409400-87418400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:87411800-87417600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:87412600-87418400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:87413000-87417000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:87414800-87417600	Weak transcription	Osteobl	bone
9	chr4:87415000-87418600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:87415000-87427000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:87415200-87417000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:87415200-87417200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:87415200-87417200	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:87415200-87417600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:87415200-87418200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:87415400-87416800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:87415400-87417000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:87415400-87417200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:87415600-87417200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:87415600-87417200	Weak transcription	NHEK	skin
21	chr4:87415600-87417600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:87415600-87417800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:87415600-87418400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:87415600-87418800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:87415600-87418800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:87415600-87419000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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