Variant report

Variant	rs10032060
Chromosome Location	chr4:143504760-143504761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143500805..143505474-chr4:143506198..143510194,5	MCF-7	breast:
2	chr4:143470903..143473181-chr4:143503452..143506011,2	MCF-7	breast:
3	chr4:143503728..143505235-chr4:143534776..143536834,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USP38-2	chr4:143504605-143504776	ENSG00000249806

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10002299	0.83[AFR][1000 genomes]
rs10002937	1.00[AFR][1000 genomes]
rs10008407	0.83[AFR][1000 genomes]
rs10008556	0.83[AFR][1000 genomes]
rs10010772	0.83[AFR][1000 genomes]
rs10013934	0.94[AFR][1000 genomes]
rs10014555	0.83[AFR][1000 genomes]
rs10014747	0.83[AFR][1000 genomes]
rs10014849	0.83[AFR][1000 genomes]
rs10014859	0.83[AFR][1000 genomes]
rs10019887	0.94[AFR][1000 genomes]
rs10020192	1.00[AFR][1000 genomes]
rs10021085	0.83[AFR][1000 genomes]
rs12331694	0.83[AFR][1000 genomes]
rs12331834	1.00[AFR][1000 genomes]
rs1425529	0.83[AFR][1000 genomes]
rs17016424	0.83[AFR][1000 genomes]
rs17016428	0.83[AFR][1000 genomes]
rs17016476	0.83[AFR][1000 genomes]
rs2113995	0.83[AFR][1000 genomes]
rs2162106	0.83[AFR][1000 genomes]
rs2162107	0.83[AFR][1000 genomes]
rs28413753	0.83[AFR][1000 genomes]
rs28481559	0.83[AFR][1000 genomes]
rs28491456	0.87[AFR][1000 genomes]
rs28562975	0.83[AFR][1000 genomes]
rs28612359	0.83[AFR][1000 genomes]
rs28620580	0.83[AFR][1000 genomes]
rs28701753	0.83[AFR][1000 genomes]
rs28713525	0.83[AFR][1000 genomes]
rs28753390	1.00[AFR][1000 genomes]
rs28758948	0.83[AFR][1000 genomes]
rs3909597	0.83[AFR][1000 genomes]
rs3909598	0.83[AFR][1000 genomes]
rs4340863	0.83[AFR][1000 genomes]
rs4361463	0.83[AFR][1000 genomes]
rs4560493	0.83[AFR][1000 genomes]
rs4560494	0.83[AFR][1000 genomes]
rs4563566	0.83[AFR][1000 genomes]
rs4579200	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143489600-143505600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr4:143489800-143519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143490800-143519200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:143492400-143506200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:143493600-143510800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:143496200-143505600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:143499200-143505400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:143501400-143506200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:143501400-143506200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:143501400-143511000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:143501600-143505600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:143502200-143505400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:143503800-143512400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:143503800-143514200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:143504000-143508600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:143504000-143511400	Weak transcription	Primary T cells from cord blood	blood
17	chr4:143504400-143505600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:143504400-143505600	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:143504600-143508200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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