Variant report

Variant	rs10032386
Chromosome Location	chr4:88327680-88327681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:88327663-88327992	GM12891	blood:	n/a	n/a
2	GABPA	chr4:88327645-88327957	K562	blood:	n/a	n/a
3	GABPA	chr4:88327658-88327891	GM12878	blood:	n/a	n/a
4	MAX	chr4:88327678-88328045	NB4	blood:	n/a	n/a
5	POLR2A	chr4:88327594-88328222	NB4	blood:	n/a	n/a
6	GABPA	chr4:88327559-88328053	HL-60	blood:	n/a	n/a
7	CTCF	chr4:88327680-88327830	NB4	blood:	n/a	n/a
8	CTCF	chr4:88327660-88327810	HL-60	blood:	n/a	n/a
9	ELF1	chr4:88327622-88327938	K562	blood:	n/a	n/a
10	SPI1	chr4:88327652-88328034	GM12891	blood:	n/a	n/a
11	MYC	chr4:88327670-88328046	NB4	blood:	n/a	n/a
12	SPI1	chr4:88327593-88328045	HL-60	blood:	n/a	n/a
13	CTCF	chr4:88327640-88327790	GM12875	blood:	n/a	n/a
14	GABPA	chr4:88327597-88328112	HL-60	blood:	n/a	n/a
15	GABPA	chr4:88327619-88327905	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000249262	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10029254	1.00[YRI][hapmap]
rs10029525	1.00[AFR][1000 genomes]
rs10433937	1.00[YRI][hapmap]
rs13118664	1.00[YRI][hapmap]
rs13130041	1.00[YRI][hapmap]
rs9992651	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3447453	chr4:88323528-88329828	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88320600-88329400	Weak transcription	Pancreas	Pancrea
2	chr4:88325800-88327800	Weak transcription	Fetal Lung	lung
3	chr4:88326000-88330600	Weak transcription	K562	blood
4	chr4:88326800-88328000	Enhancers	Stomach Mucosa	stomach
5	chr4:88326800-88329600	Enhancers	Duodenum Mucosa	Duodenum
6	chr4:88327000-88328400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr4:88327200-88329400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:88327200-88332400	Enhancers	Fetal Intestine Small	intestine
9	chr4:88327400-88327800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr4:88327400-88328000	Enhancers	Primary hematopoietic stem cells	blood
11	chr4:88327400-88329000	Enhancers	Primary B cells from peripheral blood	blood
12	chr4:88327600-88327800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:88327600-88327800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:88327600-88328000	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr4:88327600-88328000	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr4:88327600-88328000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr4:88327600-88328000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr4:88327600-88328000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:88327600-88328000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:88327600-88328000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr4:88327600-88328000	Active TSS	Adipose Nuclei	Adipose
22	chr4:88327600-88328000	Enhancers	Fetal Thymus	thymus
23	chr4:88327600-88328000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr4:88327600-88328000	Enhancers	Small Intestine	intestine
25	chr4:88327600-88328000	Enhancers	GM12878-XiMat	blood
26	chr4:88327600-88328200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr4:88327600-88328200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:88327600-88328200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:88327600-88328400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr4:88327600-88328800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr4:88327600-88329200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr4:88327600-88332400	Enhancers	Fetal Intestine Large	intestine

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