Variant report

Variant	rs10033427
Chromosome Location	chr4:119977998-119977999
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17050126	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs28588893	1.00[AMR][1000 genomes]
rs28595156	1.00[AMR][1000 genomes]
rs28742042	1.00[AMR][1000 genomes]
rs28790071	1.00[AMR][1000 genomes]
rs28897201	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119964000-119980400	Weak transcription	Fetal Stomach	stomach
2	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:119970400-119978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:119970400-119981400	Weak transcription	Ovary	ovary
5	chr4:119971000-119989600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:119973800-119978200	Weak transcription	Aorta	Aorta
7	chr4:119973800-119978800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:119975800-119994000	Weak transcription	Right Ventricle	heart
9	chr4:119975800-120003000	Weak transcription	Left Ventricle	heart
10	chr4:119977600-119978200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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