Variant report

Variant	rs10035823
Chromosome Location	chr5:75730859-75730860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10037366	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10057706	0.82[AMR][1000 genomes]
rs10063932	0.91[ASN][1000 genomes]
rs10474472	0.95[ASN][1000 genomes]
rs11741153	0.90[ASN][1000 genomes]
rs11748078	0.89[ASN][1000 genomes]
rs12189455	0.80[AMR][1000 genomes]
rs13165962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3951318	0.80[AMR][1000 genomes]
rs4130148	0.83[ASN][1000 genomes]
rs4585420	0.85[ASN][1000 genomes]
rs56189196	0.87[ASN][1000 genomes]
rs62363211	0.86[AMR][1000 genomes]
rs62363252	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6887687	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7717110	0.90[ASN][1000 genomes]
rs7718320	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7732454	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:75711000-75733600	Weak transcription	Thymus	Thymus
4	chr5:75722200-75735200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:75722400-75737000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:75722600-75737800	Weak transcription	Stomach Mucosa	stomach
7	chr5:75722800-75767800	Weak transcription	Ovary	ovary
8	chr5:75724000-75732600	Weak transcription	Fetal Intestine Small	intestine
9	chr5:75724000-75735000	Weak transcription	Primary T cells from cord blood	blood
10	chr5:75724200-75738200	Weak transcription	Pancreas	Pancrea
11	chr5:75724200-75748400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:75726200-75744600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:75728800-75736400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr5:75729000-75738200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:75729400-75732000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:75729400-75751600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:75729800-75732000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr5:75729800-75740800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:75730200-75731600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:75730400-75731600	Enhancers	HepG2	liver

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