Variant report

Variant	rs10035911
Chromosome Location	chr5:116693574-116693575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:116693270..116694072-chr5:116822684..116823457,3	MCF-7	breast:
2	chr5:116693270..116694072-chr5:116822684..116823457,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10071916	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10079714	0.90[ASN][1000 genomes]
rs10477562	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10478348	1.00[ASN][1000 genomes]
rs10478349	1.00[ASN][1000 genomes]
rs10478350	1.00[ASN][1000 genomes]
rs13164296	0.90[ASN][1000 genomes]
rs13164536	0.90[ASN][1000 genomes]
rs13177703	0.90[ASN][1000 genomes]
rs13354532	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13355712	0.90[ASN][1000 genomes]
rs1366184	0.90[ASN][1000 genomes]
rs1820667	0.90[ASN][1000 genomes]
rs2560627	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454754	0.90[ASN][1000 genomes]
rs34374339	0.90[ASN][1000 genomes]
rs35183133	0.90[ASN][1000 genomes]
rs35753719	0.90[ASN][1000 genomes]
rs4133428	1.00[ASN][1000 genomes]
rs55788310	0.90[ASN][1000 genomes]
rs55912291	0.90[ASN][1000 genomes]
rs56222571	0.90[ASN][1000 genomes]
rs62380061	0.90[ASN][1000 genomes]
rs62380371	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62380373	1.00[ASN][1000 genomes]
rs62380374	1.00[ASN][1000 genomes]
rs62380375	1.00[ASN][1000 genomes]
rs62380378	1.00[ASN][1000 genomes]
rs62380379	1.00[ASN][1000 genomes]
rs62380380	1.00[ASN][1000 genomes]
rs62380381	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62380382	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62380383	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62380384	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62380385	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62380386	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66497971	0.90[ASN][1000 genomes]
rs6861435	0.90[ASN][1000 genomes]
rs6887390	0.90[ASN][1000 genomes]
rs72812601	1.00[ASN][1000 genomes]
rs72814413	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72814414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962006	0.90[ASN][1000 genomes]
rs962007	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116687200-116697200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:116693400-116694200	Enhancers	Cortex derived primary cultured neurospheres	brain

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