Variant report

Variant	rs10036326
Chromosome Location	chr5:97764402-97764403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10076590	0.81[ASN][1000 genomes]
rs11959995	1.00[JPT][hapmap]
rs12516014	1.00[JPT][hapmap]
rs12523434	0.81[ASN][1000 genomes]
rs1455426	1.00[JPT][hapmap]
rs6594645	1.00[JPT][hapmap]
rs6870895	1.00[JPT][hapmap]
rs6885408	1.00[JPT][hapmap]
rs7715004	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv882409	chr5:97761687-97817930	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97761400-97767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97761800-97764800	Weak transcription	HSMMtube	muscle
3	chr5:97762000-97764800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:97762200-97767000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:97762400-97766600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:97762600-97764600	Weak transcription	Fetal Stomach	stomach
7	chr5:97763200-97765200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:97763400-97765000	Enhancers	NHLF	lung
9	chr5:97763400-97765200	Enhancers	HSMM	muscle
10	chr5:97763400-97767800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:97763800-97764600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:97763800-97764800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:97763800-97764800	Enhancers	Small Intestine	intestine
14	chr5:97763800-97765000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:97763800-97765200	Enhancers	Stomach Smooth Muscle	stomach
16	chr5:97764200-97765200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:97764400-97764600	Flanking Active TSS	NHDF-Ad	bronchial
18	chr5:97764400-97764800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr5:97764400-97764800	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:97764400-97764800	Enhancers	Fetal Lung	lung
21	chr5:97764400-97764800	Enhancers	GM12878-XiMat	blood
22	chr5:97764400-97765000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:97764400-97765000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:97764400-97765000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr5:97764400-97765000	Enhancers	Adipose Nuclei	Adipose
26	chr5:97764400-97765000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr5:97764400-97765000	Enhancers	Dnd41	blood
28	chr5:97764400-97765200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:97764400-97765200	Enhancers	HMEC	breast
30	chr5:97764400-97765200	Enhancers	Osteobl	bone

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