Variant report

Variant	rs10037994
Chromosome Location	chr5:112504062-112504063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112503765..112506074-chr5:112527852..112529518,2	MCF-7	breast:
2	chr5:112492254..112496189-chr5:112498530..112504608,6	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10053937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10066822	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11241194	1.00[CEU][hapmap]
rs13357890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13357974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373214	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135403	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs17135404	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1867322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1867323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2416307	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58753950	0.89[AFR][1000 genomes]
rs6897992	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7732695	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[YRI][hapmap]
rs7737490	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[YRI][hapmap]
rs935160	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112493800-112504600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:112495800-112506400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112496000-112506000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:112497800-112504400	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:112499400-112506400	Weak transcription	Adipose Nuclei	Adipose
6	chr5:112500000-112507000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:112500800-112506000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:112500800-112513800	Weak transcription	Lung	lung
9	chr5:112500800-112518400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:112501000-112504400	Weak transcription	Esophagus	oesophagus
11	chr5:112501200-112504200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:112501400-112504800	Weak transcription	Stomach Mucosa	stomach
13	chr5:112501400-112505200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:112501800-112506200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:112502000-112507000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:112502400-112504200	Flanking Active TSS	NHEK	skin
17	chr5:112502400-112504800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr5:112502800-112504600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:112503000-112504200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:112503000-112504400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:112503000-112504600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr5:112503000-112504600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:112503000-112504600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:112503000-112505000	Weak transcription	Right Atrium	heart
25	chr5:112503000-112513600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:112503200-112504200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr5:112503200-112504400	Enhancers	NH-A	brain
28	chr5:112503200-112504800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:112503200-112504800	Weak transcription	Liver	Liver
30	chr5:112503200-112504800	Weak transcription	Fetal Heart	heart
31	chr5:112503200-112505000	Weak transcription	Placenta	Placenta
32	chr5:112503200-112505000	Weak transcription	Hela-S3	cervix
33	chr5:112503200-112505600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:112503200-112514000	Weak transcription	Fetal Stomach	stomach
35	chr5:112503600-112504400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:112503600-112504400	Weak transcription	Ovary	ovary
37	chr5:112503600-112504400	Weak transcription	Right Ventricle	heart
38	chr5:112503600-112505800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:112503600-112510800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr5:112503800-112504200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr5:112503800-112504200	Weak transcription	Left Ventricle	heart
42	chr5:112503800-112505400	Weak transcription	Fetal Lung	lung
43	chr5:112503800-112505800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:112503800-112514800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:112504000-112505600	Enhancers	HMEC	breast
46	chr5:112504000-112506200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:112504000-112507200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr5:112504000-112507400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links