Variant report

Variant	rs10040204
Chromosome Location	chr5:145043216-145043217
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10036664	1.00[AMR][1000 genomes]
rs10043538	1.00[AMR][1000 genomes]
rs10043961	1.00[AMR][1000 genomes]
rs10052024	1.00[AMR][1000 genomes]
rs10052169	1.00[AMR][1000 genomes]
rs10054314	1.00[AMR][1000 genomes]
rs10073313	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077242	1.00[AMR][1000 genomes]
rs10476875	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13354398	1.00[AMR][1000 genomes]
rs13356403	1.00[AMR][1000 genomes]
rs13436791	1.00[AMR][1000 genomes]
rs13436850	1.00[AMR][1000 genomes]
rs2217647	1.00[AMR][1000 genomes]
rs28507009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4345360	1.00[AMR][1000 genomes]
rs73302023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs868778	1.00[AMR][1000 genomes]
rs9285664	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
2	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145034200-145046400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr5:145042000-145044200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:145042000-145045800	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:145042400-145053200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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