Variant report

Variant	rs10041927
Chromosome Location	chr5:95033012-95033013
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95032832..95035224-chr5:95072167..95074640,2	MCF-7	breast:
2	chr5:95032585..95034233-chr5:95078936..95081710,3	MCF-7	breast:
3	chr5:95031841..95037563-chr5:95043452..95050597,14	MCF-7	breast:
4	chr5:95032514..95039868-chr5:95065272..95071370,13	MCF-7	breast:
5	chr5:95032456..95034371-chr5:95094869..95096496,2	MCF-7	breast:
6	chr5:95021327..95022840-chr5:95031352..95033975,2	MCF-7	breast:
7	chr5:95031694..95034206-chr5:95053621..95055675,2	MCF-7	breast:
8	chr5:94979988..94984168-chr5:95032454..95035928,4	MCF-7	breast:
9	chr5:95030766..95038024-chr5:95063760..95069646,19	MCF-7	breast:
10	chr5:95032657..95035811-chr5:95043701..95049648,10	MCF-7	breast:
11	chr5:95029499..95032451-chr5:95032655..95034406,2	MCF-7	breast:
12	chr5:95027058..95030624-chr5:95030669..95034324,6	K562	blood:

No data

No data

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10050746	1.00[AFR][1000 genomes]
rs10051654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052288	1.00[AFR][1000 genomes]
rs10071673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076138	1.00[AMR][1000 genomes]
rs10077822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085065	1.00[AMR][1000 genomes]
rs17085067	1.00[AMR][1000 genomes]
rs17085087	1.00[AMR][1000 genomes]
rs17085092	1.00[AMR][1000 genomes]
rs17085131	1.00[AMR][1000 genomes]
rs17085133	1.00[AMR][1000 genomes]
rs17085143	1.00[AMR][1000 genomes]
rs28469700	1.00[AMR][1000 genomes]
rs28927968	1.00[AMR][1000 genomes]
rs28927970	1.00[AMR][1000 genomes]
rs29000874	1.00[AMR][1000 genomes]
rs29000875	1.00[AMR][1000 genomes]
rs56727798	1.00[AMR][1000 genomes]
rs57696954	1.00[AMR][1000 genomes]
rs58023885	1.00[AMR][1000 genomes]
rs889223	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95015000-95040400	Weak transcription	HSMMtube	muscle
2	chr5:95017600-95039800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:95029800-95034000	Weak transcription	Pancreas	Pancrea
4	chr5:95031200-95036400	Enhancers	Placenta	Placenta
5	chr5:95031400-95046000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr5:95031600-95036800	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:95032000-95034000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:95032200-95033400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:95032400-95033200	Strong transcription	Adipose Nuclei	Adipose
10	chr5:95032800-95034000	Strong transcription	Ovary	ovary
11	chr5:95032800-95034000	Enhancers	K562	blood
12	chr5:95032800-95034800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:95033000-95033200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:95033000-95033400	Flanking Active TSS	Hela-S3	cervix
15	chr5:95033000-95034400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:95033000-95034400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:95033000-95034400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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