Variant report

Variant	rs10045282
Chromosome Location	chr5:74273341-74273342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10066902	0.83[ASN][1000 genomes]
rs10078075	0.83[ASN][1000 genomes]
rs10805892	0.83[ASN][1000 genomes]
rs11748722	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4072296	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4235682	0.83[ASN][1000 genomes]
rs4382144	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4392602	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4413513	0.83[ASN][1000 genomes]
rs4703642	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6453099	0.92[ASN][1000 genomes]
rs6453100	0.82[ASN][1000 genomes]
rs6863602	0.83[ASN][1000 genomes]
rs6867482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6883719	0.83[ASN][1000 genomes]
rs6889166	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6898812	0.83[ASN][1000 genomes]
rs7736223	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9293637	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74261800-74290400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:74265800-74275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:74271000-74273600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr5:74271000-74274400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:74272400-74274000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr5:74272400-74274800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:74272400-74274800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:74272600-74273400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr5:74272600-74273400	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr5:74272600-74273600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:74272600-74273600	Enhancers	Stomach Mucosa	stomach
12	chr5:74272600-74274200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:74272600-74274800	Enhancers	Primary hematopoietic stem cells	blood
14	chr5:74272800-74274600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr5:74273000-74273400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:74273200-74273400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr5:74273200-74273400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:74273200-74273600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr5:74273200-74274600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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