Variant report

Variant	rs10046394
Chromosome Location	chr6:56020892-56020893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10223337	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333329	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464363	1.00[AMR][1000 genomes]
rs9464364	1.00[AMR][1000 genomes]
rs9464365	1.00[AMR][1000 genomes]
rs9475573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475576	1.00[AFR][1000 genomes]
rs9475579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475592	0.91[AFR][1000 genomes]
rs9475597	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475600	1.00[AMR][1000 genomes]
rs9475601	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475603	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475605	1.00[AMR][1000 genomes]
rs9475609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475613	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475614	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475618	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475619	0.91[AFR][1000 genomes]
rs9475625	1.00[AMR][1000 genomes]
rs9475629	0.83[AFR][1000 genomes]
rs9475630	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475635	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475636	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475638	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
2	chr6:55999000-56021200	Weak transcription	Aorta	Aorta
3	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:56017800-56021000	Weak transcription	Fetal Stomach	stomach
5	chr6:56019400-56023400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:56019600-56021000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:56019600-56021800	Strong transcription	Fetal Muscle Leg	muscle
8	chr6:56019800-56021800	Strong transcription	Fetal Muscle Trunk	muscle
9	chr6:56020000-56021800	Strong transcription	Fetal Lung	lung
10	chr6:56020000-56023400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:56020200-56021800	Enhancers	HepG2	liver
12	chr6:56020400-56026000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:56020600-56021800	Strong transcription	Ovary	ovary

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